Rahnella inusitata: I2123_16115
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Entry
I2123_16115 CDS
T09790
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
riu
Rahnella inusitata
Pathway
riu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
riu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
I2123_16115 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
riu03400
]
I2123_16115 (sbcB)
Enzymes [BR:
riu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
I2123_16115 (sbcB)
DNA repair and recombination proteins [BR:
riu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
I2123_16115 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
I2123_16115 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
I2123_16115 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QUT17459
LinkDB
All DBs
Position
3414858..3416285
Genome browser
AA seq
475 aa
AA seq
DB search
MSDKPQKTFYFHDYETFGKNPALDRPAQFAGVRTDEDFNIIEEPLVIYCRPSDDYLPEPE
AVMITGITPQIALERGLNEAEFTAQIHQAFSVPGTCIVGYNNIRFDDEVSRNILYRNFYD
PYAYSWQNGNSRWDLLDVMRACYALRPEGINWPENDEGFPSFRLEHLTKANGIEHENAHD
AMADVYATIAMAKLVKQAQPRLFSFLLEHRSKHKLNQLIDIPSMAPLVHVSGMFGAARGN
TAWVAPLAWHPENKNAVIMCDLAGDMSTLLDLDPDQMRERLYSRRDSLEPGQSPLPVKLV
HINKCPVLAPAKTLLPENAERLGIDRQRCLENLQLLRQNPQVRDKVVTMFAEAEPFVASE
DVDARLYDGFFSDADRAAMRILLETRPENLPALDLTFNDSRIEPLLFRFRARNYPETLTD
AEQKRWMAHRQTKLTDERFQNYALELEALYNLHEGDAEKIALLKALFEYGKRLAS
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacaagccgcaaaaaaccttttatttccacgattacgagacattcggtaaaaat
ccggcgctggatcgtccggcacagtttgccggggtaagaactgacgaagatttcaatatc
atcgaagaaccgttagtgatctattgccgcccgtctgacgattatctgcccgagccggaa
gccgtgatgatcaccggcattacgccacaaatcgcgctcgaacgcggcctgaacgaagcg
gagtttaccgcgcaaatccatcaggctttcagcgtgcctggcacctgtatcgtcgggtat
aacaacatccgtttcgacgatgaagtcagccgcaacattctgtatcgcaacttttacgac
ccgtacgcctacagctggcagaacggcaattcccgttgggatttactcgacgtgatgcgc
gcctgctacgcgctgcgcccggaaggcatcaactggccggaaaatgacgagggtttcccg
agtttccgccttgagcacctgaccaaagccaacggcatcgaacacgaaaatgctcatgac
gcgatggccgatgtttacgccaccattgccatggcgaaactggtcaaacaggcgcagccg
cgtctgttcagctttctgctggagcatcgcagtaagcacaaactcaaccagcttatcgac
atcccttctatggcaccgctggtgcacgtctccggtatgttcggtgccgcgcgcggcaat
accgcgtgggtcgcgccgctggcgtggcatcctgagaataaaaatgccgtgatcatgtgc
gacctggccggtgatatgtcgacgctgctggatctcgatccggatcagatgcgtgaacgc
ctgtacagccgccgtgattcgctggaacccggtcagtctcctctgcctgtcaaactggtg
cacatcaataaatgtccggtgcttgccccggccaaaacgctgttgccggaaaacgccgag
cgcttaggcattgatcgtcagcgttgtctggagaacctgcaactgctgcgtcagaatccg
caggtgcgcgataaggtggtaaccatgttcgccgaagccgagccctttgtcgcttccgag
gacgttgatgcccgcctgtacgacggtttcttcagtgacgccgatcgcgccgcgatgcgc
attctcctggaaactcgccccgagaaccttccggcactggatctgacgtttaacgattcg
cgcatcgaacccctgctgtttcgcttcagagcgagaaattatcctgagaccctgacggat
gccgaacagaaacgatggatggcgcaccgacagaccaagctgaccgatgagcgtttccag
aattatgccttagagctggaggcgctctataacttgcatgagggggatgctgagaagata
gcgcttctcaaagcgctgtttgaatatgggaaacggttagcgtcgtag
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