Rivularia sp. PCC 7116: Riv7116_0010
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Entry
Riv7116_0010 CDS
T02364
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
riv
Rivularia sp. PCC 7116
Pathway
riv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
riv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Riv7116_0010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
riv03019
]
Riv7116_0010
03400 DNA repair and recombination proteins [BR:
riv03400
]
Riv7116_0010
Enzymes [BR:
riv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Riv7116_0010
Messenger RNA biogenesis [BR:
riv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Riv7116_0010
DNA repair and recombination proteins [BR:
riv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Riv7116_0010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
GerE
HTH_24
HTH_IclR
TnsD
ResIII
HTH_38
Sigma70_r4_2
MarR
HTH_11
MarR_2
Mga
Motif
Other DBs
NCBI-ProteinID:
AFY52626
UniProt:
K9R5A2
LinkDB
All DBs
Position
complement(13016..15175)
Genome browser
AA seq
719 aa
AA seq
DB search
MSVHPNLENALKHHFGYDSFRSPQREIIVEALENRDLLVIMPTGGGKSLCFQLPALMKEG
LTVVVSPLIALMQDQVDGLRKNGIPATFLNSSVSPHKVRMREQAILAGKVKLLYVAPERL
LSERFLPLLDLVHHQIGISAFAIDEAHCVSEWGHDFRPEYRQMISLRQRYPNVPIWALTA
TATERVRLDIIKQLGLKQPNVHIASFNRQNLYYEVRPKKKNSYVELLGLIQDNEGSGIIY
CLTRKKVEELAFKLQHDKISALPYHAGLSDVERSENQTKFIRDDARIIVATIAFGMGINK
PDVRFVVHYDISRNLESYYQESGRAGRDGESSRCMLFLSYSDVKTIEWLIDQKSNEQEQM
IAKHQLRQMIDYAEGTDCRRAIQLSYFGERFTGNCGNCDNCNNPKPVEDWTIEAMKFLSC
VARCKQRFGMKHIIDVLRGSKTQKVLSKGHDKLSTYGIGKDRTLDEWRMLGRSLLHQGLL
EQTTDGYAVLKLNAFSLEVMKKQRSVSVVVPAKEKVAWKGRSEKAEQADILFQKLRELRK
QLADAQSVPPYVIFGDSTLRLMTQMKPKTKQEFSQLAGVGSHKLTQYGDKFIAVIKAYLQ
EQSPQKQKYADQKGDISYTELQTFELHKEGLSIKEIAQQRNLRSTTITRHLSDLIEKDKP
VDLNLLVTTDKQKKIIQVLDILGDISLTPIKEYLGDDYSFDEIRLVRGKWRKKTNKVKK
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgcatcccaacctagaaaacgctctcaaacaccacttcggttatgacagcttt
cgttctccgcagcgagaaattattgttgaggcattagaaaatcgcgatttactggtaata
atgccgacgggtgggggtaaatcgctgtgttttcaacttcctgcattaatgaaagaagga
ttgacggtagtagtatccccgttaattgcgttgatgcaagatcaagtagatggattgcga
aaaaacggaattccggcaacttttcttaatagtagtgtcagccctcataaagtgagaatg
cgcgagcaagcgattctcgcaggcaaagtcaaattgctttatgttgcaccagaacgttta
ctcagcgaaagatttcttcctttactggatttagtacatcatcaaattggtatttctgct
ttcgcgattgatgaagcacattgcgtttccgaatgggggcatgattttcgtccggaatat
cggcaaatgatatcgctgcgacagcgttacccaaatgtaccaatttgggcgcttaccgct
accgctacagaaagagtccgcttagatatcatcaaacaattaggattaaagcaacccaac
gttcatatcgctagttttaatcgtcaaaatctttattatgaagttcgtccgaaaaagaag
aattcttatgtagaacttttaggacttattcaggataatgaaggttcgggaattatttac
tgtttgacgcggaaaaaagttgaagaattagcttttaagctacagcacgataaaatttct
gctttaccctatcatgccggtttgagcgatgtagaacgcagtgaaaatcagaccaagttt
attcgagatgatgccagaattattgttgcaactattgctttcggcatgggcattaataaa
cccgatgtgcgttttgtagttcattacgatatttcacgaaatttagaaagttattatcaa
gaatcgggaagagcgggtagagatggcgaatcttcgcgctgtatgctttttttaagttac
agcgatgtcaaaaccattgaatggttgatcgatcaaaaaagcaacgaacaagagcagatg
atcgctaaacatcaactgcgtcaaatgattgattatgctgaaggtacagactgccgccgt
gcaattcagttgagctacttcggggaaagatttacaggtaactgcggtaattgcgataac
tgcaataatcccaaaccagtagaagattggactattgaagccatgaaatttttgtcttgc
gtggcgcgctgcaagcaaagatttggcatgaaacacatcatagatgttctacggggaagc
aaaactcagaaagttcttagtaaaggacacgataagctttctacttatggaattggtaag
gatagaacgcttgacgaatggcgaatgttaggacgttctttactgcatcaaggtttacta
gaacaaactactgatggttatgcggtattaaaacttaatgctttcagtttggaagtaatg
aagaagcagcgctccgtttctgttgttgttcccgccaaagaaaaagtagcctggaaagga
agaagcgagaaagcagaacaagcagatattttatttcaaaaattacgcgaacttcgcaaa
cagcttgccgacgctcagtctgttccaccttacgttattttcggtgattctactttacga
ctaatgacgcagatgaaaccgaaaacaaagcaggaatttagccagcttgcgggggttggt
agtcacaagctgactcaatatggcgataagtttattgcagtaatcaaagcttatttacaa
gaacaaagtcctcagaaacaaaaatatgccgatcaaaaaggagatatttcatatacggaa
ttacaaacttttgaattgcacaaagaaggactgagtatcaaagaaattgctcaacagcgc
aaccttcgctctactacaattactcgtcatctttcagatttaattgaaaaagataaacca
gtagatttaaatttattagttactaccgataagcagaaaaaaatcattcaagttttagat
attttaggagacatatctttaacacctatcaaagagtatttaggtgatgattacagcttt
gatgaaatccgcttagttaggggaaagtggagaaaaaaaactaataaagttaaaaaatag
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