Rivularia sp. PCC 7116: Riv7116_0015
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Entry
Riv7116_0015 CDS
T02364
Name
(GenBank) exoribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
riv
Rivularia sp. PCC 7116
Brite
KEGG Orthology (KO) [BR:
riv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
riv03016
]
Riv7116_0015
Enzymes [BR:
riv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Riv7116_0015
Transfer RNA biogenesis [BR:
riv03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Riv7116_0015
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GFIT
Motif
Pfam:
RNB
HTH_RNase_II
CSD_RNase_II
BacteriocIIc_cy
Motif
Other DBs
NCBI-ProteinID:
AFY52631
UniProt:
K9R5A8
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All DBs
Position
complement(19384..21429)
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AA seq
681 aa
AA seq
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MEKGTLVEFRNQGERRLGVVERPDGKNRWIVLDERGQSTSLAPRQFTYKVVGQTYKPSEI
PDFLKQVESYLDPSSLEVAWELLIEDSTSATPEEMANLLFSQVEPPQVYAAHCLLSDDKV
YFKQKGDGYEPRSANAVAERKHQLEVEALKAQGQQEFLTRVQQALDGETVEWQKHDRHRL
EALEKYAALLADVTRGGVKYESLAQAYPPPAQVLETMTMLGRTATPQGAFELLVDLGWWS
PNQNLFLRRSSIPVQFPTKVLDVAHERLNAPPPDPDQNRLDLTHLKVYTVDDETTTEIDD
GLSWETLPDNRERVWVHIADPTRWLVPEDELDLDARKRGSTVYLPTGMIPMFPEILATGP
MSLIQGEICCALSFGIVLDETGGVEEYSIHASLIKPTYRLTYEDVNDILESGVREEPEIA
ALGKWAKKRKSWRYEQGAISINMPEAMIKVKDDEVNIDLLDDSHSRQLVAEMMILTGEVA
ARYGKTHSIPLPFRGQPQPELPPEEELLLLPAGFVRACAMRRCMPKSEMSINPLRHAGLG
LETYTQATSPIRRYSDLLTHFQIKAHLRGDVLPFSAEGLKEVMMNVTSITQEVVMVERQT
NRYWALEYLRRHLNKAWDTTVLMWLREDSNLALILLEDLGLQLPMFFKRAVNLGEEISVK
VTHSDPQKDIIQFQEIIYQEA
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
gtggaaaaggggacgctggtagaatttagaaatcaaggcgaacgtcgtttgggtgtagta
gagcgcccagatggaaagaaccgttggattgtattagacgaacgaggacaatccacaagt
cttgcgccaagacaatttacctacaaagttgtcggacaaacttacaagccatcggaaata
ccagattttctgaagcaggtagagtcgtatttagacccctctagcttagaagtagcttgg
gaattattgatagaagacagcacatcggcgactccagaagagatggctaatttactgttt
tcccaggtagagccacctcaagtttatgcggctcactgcttgttatcggatgataaagtt
tattttaagcaaaagggtgacggttacgaaccgcgaagtgcaaatgccgttgcagagcgc
aagcaccaattggaagtagaagctctgaaagcccaggggcagcaggaatttttaacaagg
gtacagcaagcgcttgatggcgaaactgtagaatggcagaagcacgaccgtcacagatta
gaagccttagaaaaatatgccgccttactggcagatgtaacgcggggtggagttaaatac
gaatcattggctcaagcttatcccccacccgcgcaagttttagaaacgatgacaatgctt
ggacgcactgccactcctcaaggagcgttcgagttgcttgttgatttgggttggtggagt
ccaaatcaaaacttatttttacgtcgttcttcaatccccgttcaatttcctactaaggta
ctagatgtggcgcatgaacgcttgaacgctcctcctccagatccagatcaaaaccgtttg
gatttaactcatttgaaagtctatacggttgatgatgaaacaactacagaaattgatgat
ggtttgagttgggaaacgcttcccgacaatagagaaagggtatgggttcatattgccgat
cccacacgatggcttgtacccgaagatgagttagatttggatgccagaaagcgcggtagt
acggtatatttgccaacaggaatgattcctatgttcccggaaatattggcaaccggcccg
atgagtttgatacagggagaaatctgttgtgccttaagtttcgggattgttttagatgaa
actggtggtgtagaagaatatagcattcatgccagtttgattaaaccgacttatcgtctt
acctacgaagatgtaaacgatattttggaatcgggagtccgagaagaacccgaaattgca
gcccttgggaaatgggcaaagaagcgcaagtcatggcgttacgagcaaggagccatcagc
ataaatatgcctgaggcaatgattaaagtaaaagatgacgaagttaatatcgatttgcta
gatgattctcattcccggcaattagtagcagaaatgatgattcttacgggtgaagtcgcg
gctcgttacggaaaaactcatagtatacccttgccttttcgtgggcagccgcagccagaa
ttaccaccagaggaagaattgctactactaccagcaggttttgtccgtgcctgtgccatg
cggcggtgtatgccaaagagcgaaatgagcattaaccctttgcgccacgcaggtttaggg
ctagaaacttatacgcaagctacttccccaattcgccgctatagcgacttgctgactcat
ttccaaattaaagctcatctgcgaggtgatgttttacccttctcagcggaaggacttaag
gaagtcatgatgaatgtcaccagtattactcaagaagtagtaatggtagagcggcaaact
aatagatattgggcattagaatatcttcgccgtcatttaaataaagcatgggataccact
gttttaatgtggttaagagaagatagcaatttagcgctaattttattagaagatttaggt
ttacagttaccaatgtttttcaagcgggctgtaaatttgggtgaagagatttcagtaaaa
gttactcactccgatcctcaaaaagatattattcaattccaagagataatttatcaagaa
gcttaa
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