Rivularia sp. PCC 7116: Riv7116_0637
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Entry
Riv7116_0637 CDS
T02364
Name
(GenBank) hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
riv
Rivularia sp. PCC 7116
Pathway
riv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
riv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Riv7116_0637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
riv03019
]
Riv7116_0637
Messenger RNA biogenesis [BR:
riv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Riv7116_0637
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AFY53230
LinkDB
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Position
complement(811846..813621)
Genome browser
AA seq
591 aa
AA seq
DB search
MAKKEVTSAFKIIPLGGLHEIGKNTCIFEYEDEIILLDAGLAFPTDQMHGVNIVLPDMTY
VRENRHKIKGMVVTHGHEDHIGGIAFHLKQFDIPVIHGPRLAMAMLERKLEEAGVRDRTE
LKTVRPRDMVRIGKNFLVEYIRNTHSICDSFTVAIHTPLGVVIHSGDFKVDHTPVDGEHF
DLQRLAEHGEKGVLCLMSDSTNAEVPGFTPSERSVYPNLEKIVMQAEGRLFITTFASSVH
RINMILQLAQKHGRSVSVVGRSMLNLIAHARNLGYIKCEDKLFQPLHVARSLPDDKVLIL
TTGSQGETMAAMTRIARGEHPHIKIREGDTVAFSANPIPGNTIAVVGVIDKLMQQGAKVI
YGRSHGIHVSGHGCQEDHKLMLALTKPKFFLPVHGEHRMLVKHSQTAQSMGIPAENMVII
ENGNIVELTENSISVAGTVPSGLELVDTSGSGMVSDKVLLERQRMAEEGIVTVAAAVDWA
GKMLAKPEIHLRGVVTSMEKSMVQKWVQQRFEEILELRWEEFGQPLNGKKPDIDWGGLQE
AIERDLARNLRRELRCQPTVTLLMQIPDEPPAKVSDGRRRRTRTAAQQVAS
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggctaagaaagaagtaacctctgccttcaaaattattccattgggcggactgcatgaa
attggaaaaaatacttgtatttttgagtatgaagacgaaattatcttattagatgctggt
ttggcttttcctaccgatcaaatgcatggagtcaacattgtcttaccagacatgacttac
gtgagagaaaatcgtcataaaatcaagggtatggtagttacccacgggcatgaagaccat
attggcggtattgcatttcacctcaaacagtttgacattcctgtaattcatggtcctagg
ctagctatggcaatgttggaacgtaagttagaggaagctggagttcgcgatcgcactgaa
ttaaaaaccgtaagaccccgcgatatggtgcggattggtaagaattttctggtagagtat
atccgcaatacacatagtatttgtgatagttttacagttgcgatacatacgccattaggt
gtagtgattcattcgggagattttaaagtcgatcatactccagtagatggcgaacatttt
gatttgcaaagattagccgagcatggtgagaagggcgtactttgcctaatgagcgattct
actaatgcagaagtacctggttttactccttcagaacgttctgtgtatcccaatttagaa
aaaatagtaatgcaagctgaaggcagacttttcattactacttttgcttcttcggtacat
cgcatcaacatgattttgcagctagctcaaaaacatggtagatcggtatcggttgttggg
cgttcgatgttgaatttgattgcccacgctcgcaaccttggctatattaaatgcgaagat
aagctatttcaacctttgcacgttgctcgtagtttgccagatgacaaggtattgatttta
actactggttctcaaggcgaaacaatggcggcgatgacccgtattgcaaggggagaacat
cctcatatcaagataagagaaggcgatactgtggcgttctccgctaatcctatacctgga
aataccattgcagtggttggagttattgacaaattaatgcagcaaggcgcaaaggttatt
tacggtcgctctcatggaattcacgtttccggacatggctgtcaggaagaccacaagttg
atgcttgccttgacaaaacctaaattcttcttacccgttcatggcgaacatagaatgcta
gtcaaacattctcagacagcccaaagtatgggtattcctgccgaaaatatggtgattata
gagaatggtaacattgtcgagttgaccgaaaattcgattagtgttgcgggtacagtaccg
tctggcttggaattagtcgatacctccggttctggtatggttagcgacaaagttttgcta
gagcgccaacgcatggcagaagaaggtatcgttaccgttgcagcagcagtagattgggct
ggcaagatgttagccaaaccggagattcatttgcggggtgtagttacgagtatggaaaaa
tcgatggtgcaaaaatgggtgcagcagcgatttgaggaaatacttgaattacgttgggaa
gaatttggtcagcctttgaatggtaaaaagccagatatagattggggtggtttacaagaa
gcgatagaacgggatttagcgcgtaatttgcgtcgcgagctgcgatgtcaacctacagtc
actttattaatgcagattcctgacgaaccacctgcgaaagtttctgatggtagaagaaga
cgcactcgtactgctgctcaacaagttgcgtcgtag
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