Rivularia sp. PCC 7116: Riv7116_0721
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Entry
Riv7116_0721 CDS
T02364
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
riv
Rivularia sp. PCC 7116
Pathway
riv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
riv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Riv7116_0721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
riv03021
]
Riv7116_0721
03400 DNA repair and recombination proteins [BR:
riv03400
]
Riv7116_0721
Enzymes [BR:
riv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Riv7116_0721
Transcription machinery [BR:
riv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Riv7116_0721
DNA repair and recombination proteins [BR:
riv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Riv7116_0721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AFY53309
UniProt:
K9R7H5
LinkDB
All DBs
Position
913664..917818
Genome browser
AA seq
1384 aa
AA seq
DB search
MNEKMIFRNRVVDKKQLRKLIAWGFTHYGTARTAVMADKLKDLGFRYATKAGVSISVDDL
MVPPSKRSLLDAAEEEIRATEKRYQRGEITEVERFQKVIDTWNGTSEALKDEVVSHFKSN
NPLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEYIISS
YGARKGLVDTALRTADSGYLTRRLVDVSQDVIIRETDCGTSRGIPVVAMMEGNKTLIPLS
SRLLGRAVNEDVVHPKTGEVLATRNTPITEELADEIEASGVTKVEVRSPLTCEAARSVCQ
HCYGWSLAHAKMVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVAQQVRAKADGT
VRFKGKFRTRPFRTRHGEDALFVETNGTLVLEPSGSPKSSGMEIGVTKGSTLYVNNGSKI
KQGQLLAEVALGARTTRINTEKAVKDVASDIAGQVRFADVVAEQKTDRQGNTTTTAVRGG
LIWILSGEVYNLPPGAELVVENGDKIQTNGVIAETKLTSQHGGGVRLPEATPGKSTREIE
IMTASIVLDRAAVTVQSSQGRNNYLITTANNQVFNLRATPGTKVQNSQVVAELIDDRYRT
NTGGLLKFSGVEVQKKGKAKQGYEVVQGGTLLWIPEETHEVNKDISLLIVEDGQFVNAGD
EVVKDIFCQNSGVVEVTQKNDILREVVVKPGELLMVDDPEAVMSKDGTFVQAGEEFLGTT
FTELRYIEYVETPEGPAVLSRPVVEFPIPTDPEVPSTTSGTDENGRSIQLKAVQKISYKD
SERIKSVEGVELLRTQLVLEIEQEGDEHTTSPLAADIELVADENDPEIQRLQLVILESLV
IRRDIAADATQGSTNTNLEVVDGQTIEPGAVVSRTQILCKEGGTIQGVKVGTDAPRRCLI
LRTGDTFTINLNQAPTCKVGDLLVEGAEIAPGIFAELSGQVVDAGTGSRAINASNSEEEG
SIVPAGESSHYLTLRMGRPYRVSPGAILQVDDTDLVQRGDNLVLLVFERAKTGDIIQGLP
RIEELLEARKPKEGCILARRTGEVKPVYGDGDEAIAIKILEAGGVVTDYSLGPGQNMVVS
EGQTVETGQPLTDGPSNPHEILEVFFNQGSDEGVYACASHALQKVQSFLVNEVQSVYQSQ
GIDIADKHIEVIVRQMTSKVRVDDGGDTTMLPGELVELRQIEQVNEAMSITGGAKAQYTP
VLLGITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFN
AYEEMGIVDDYAGDMSNSVLDEVDDPLDMVLDDRTARSYNLDSPTMTPDFGNRTASPSIL
DDTNELMGSSLPVTADSEAIKDLNPIQDDNDLNQVSNDSVLEDLKEFGLDTNFSPDTDFS
SDDE
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaaaaatgattttccgcaaccgcgtggttgataagaagcaactaagaaagctg
attgcgtggggtttcactcattacggtacggctcgaactgctgtaatggcggataagtta
aaagatttgggttttcgttatgctaccaaggctggtgtttctattagcgttgatgaccta
atggttccaccgtcgaaacgttctttgctagacgctgccgaagaagaaattcgcgctact
gaaaagcggtaccagcgtggagagattactgaggtagaacgttttcagaaggtaattgat
acttggaacggtacttctgaagctcttaaagatgaggtggtaagtcactttaaaagcaat
aatccccttaactcggtatacatgatggcatttagtggtgctaggggtaatatttcccag
gtacgtcagttggtgggaatgcggggattaatggcagatccacaaggggaaattattgac
ttaccaattaaaactaatttccgcgaaggactgacggtaactgaatacatcatctcttct
tacggtgcccgtaaaggattggtggatactgcactgcgaactgctgatagtggttatctt
accagacgtttggtggatgtatcccaagatgtgattatccgcgaaactgactgcggtact
tctcgcggtattcctgttgtggcgatgatggaagggaataaaactttaattcctctttcc
agtcgtcttttaggaagagcagttaacgaagatgtggtgcatcccaaaactggtgaagta
cttgcaactcgcaataccccgattactgaagaacttgcagacgagattgaagcctccggt
gttacaaaggtagaagttcgttctcccctaacttgtgaagccgcacgtagtgtctgccag
cattgttacggctggagtttagcacatgccaagatggtggatttgggtgaagcagtaggt
attattgccgctcaaagtattggggaaccaggtactcagctaaccatgcgtaccttccac
actgggggtgtatttaccggggaagtcgcgcaacaagtacgagctaaagccgatggtacg
gttcgttttaaaggcaaattccgcaccagacctttccgtacccgtcacggtgaagatgct
ttgtttgtagaaaccaatggaactttagttctggaaccgagcggcagtcccaagtcatct
gggatggaaattggggtaactaaaggttcaactttatatgtaaataatggctcgaagatt
aagcagggtcaattattagcagaagtcgccttgggtgcaagaactacaagaattaacact
gaaaaggctgtaaaagatgtagcttctgatattgccggacaagtccggtttgccgatgtc
gttgcagaacaaaaaactgaccgtcaagggaatactactactacggcagtaagaggcggt
ttgatttggattttgtcgggagaagtatataatttacctcctggagccgaattggtagtt
gaaaacggcgacaaaattcaaactaacggtgtaattgccgaaaccaagttgacctctcaa
catggcggtggcgtgcgcttaccagaagcaactcctggtaaaagtactcgggaaatcgaa
ataatgacagcttcgattgttttggatagagccgccgttaccgtccaaagttctcaaggg
cggaataactatttaattactactgcaaacaatcaagtctttaatttgagagccactccc
ggcacaaaagtacaaaactctcaagttgtagcagaattaatagacgatcgctatcgtacc
aatactggaggattgctgaaattctccggagttgaagtacagaagaaaggtaaggcaaaa
caaggttatgaagtggtgcagggaggtaccttattatggatacccgaagaaacccacgaa
gttaataaagatatctccttgttaatcgtcgaagacggtcaatttgtgaatgctggtgat
gaagttgttaaagacatcttctgtcaaaatagcggtgttgttgaagtcactcagaaaaac
gatattttacgagaagtcgtagttaaaccgggcgaactgctaatggttgacgatccagaa
gcagtgatgagtaaagacgggacttttgtgcaagccggtgaagaatttttgggtacaacc
tttacagagctacgctatatcgaatacgtagagacaccagaaggtccagcagtattaagt
cgtcctgtagttgaatttcccataccaaccgacccagaagtaccatctactacttcgggt
actgatgaaaatgggcgttccatccagttaaaagcagtacaaaaaatatcttataaagac
tcagagcgcatcaagtctgtagaaggtgtagaactgctgcgaacccagttggtgttagaa
attgagcaagaaggtgatgaacatactacttctccccttgcagcagatatcgaattggtc
gctgatgaaaacgacccagaaattcaacgcttgcaattggtaattttagaatctttggtg
attcgtcgcgatattgctgctgatgcgactcagggaagtaccaataccaatctggaagtc
gttgacggacaaaccatagaacctggtgctgtagtatcccgtacccaaatcttgtgtaaa
gaaggaggtacaattcaaggcgtgaaggtgggaactgatgcacctcgtcgctgcttgata
ttaagaaccggcgatacctttactattaatttgaatcaagctcctacctgtaaagttggc
gacttgttagttgaaggtgctgaaattgctcctggaatattcgcagaactttccggacaa
gtagttgatgcaggtaccggtagtagggcaattaacgccagtaatagtgaggaagaggga
agtatagtaccagcaggagaatcttctcactatcttaccttgcggatgggtcgcccctat
cgagtcagccctggtgccatactgcaagtagatgataccgatttggtacagcgtggtgac
aacttagtattgttagtatttgaacgcgccaaaaccggtgatatcattcaaggtttgcct
cgaattgaagaactgcttgaagctcgtaaacccaaagaaggctgtattttggctcgcaga
actggagaagttaaaccagtttatggcgacggtgacgaggcgatcgccattaaaattctg
gaagcagggggtgtagtcaccgattattctctcggcccaggacaaaatatggtagtttct
gaagggcaaacggtagaaaccggacaaccgctaacagatgggccatctaaccctcatgaa
atattggaagtattctttaaccaaggttccgatgaaggggtttacgcttgtgccagccac
gctttgcaaaaagtacagagcttcttggtgaatgaagtacagtcggtataccaatctcag
ggaattgacattgcggacaagcatattgaagtaattgtacgtcagatgacctccaaagtc
cgagtagatgacggcggcgatacgacaatgctacctggagaattggtggaactgcgtcaa
atcgaacaggtaaatgaagcgatgtccattactggtggtgccaaggctcagtatacgcca
gtattattagggataactaaagcatcattgaatacagatagtttcatctcagccgcatcc
ttccaggaaacaactcgcgttcttaccgaagcagcaatcgaaggaaagtccgactggttg
cgtggtttgaaagaaaatgtgattattggacgattaattcctgcgggtactggattcaat
gcttatgaagagatgggtatagttgatgactatgctggcgacatgagcaacagcgtcttg
gatgaagtcgatgacccattagatatggtcttagacgatcgtacagcccgcagttataat
ttggattctccaacaatgactccagattttggaaacagaactgcttcaccatcaatatta
gatgatactaatgaattgatgggcagtagcttaccagtaactgccgacagcgaagctatt
aaggatttaaatccaatacaagacgataatgatttaaatcaagtcagcaacgatagtgtc
ttggaagacttaaaagaatttggattagacaccaacttctcacccgataccgatttctca
tcagatgacgaataa
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