Rivularia sp. PCC 7116: Riv7116_1014
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Entry
Riv7116_1014 CDS
T02364
Name
(GenBank) RNA polymerase sigma factor, cyanobacterial RpoD-like family
KO
K03086
RNA polymerase primary sigma factor
Organism
riv
Rivularia sp. PCC 7116
Brite
KEGG Orthology (KO) [BR:
riv00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Riv7116_1014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
riv03021
]
Riv7116_1014
Transcription machinery [BR:
riv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Riv7116_1014
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
AFY53588
LinkDB
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Position
1293135..1294304
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AA seq
389 aa
AA seq
DB search
MNQANNVLENIYQPNLGVINQPEMELEILIDDEEEEEDLVNEGEEGEFVEAGADEAVKAG
KAAKGRRRTQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVGDRLV
QQLERQPQESEWAEAVQLPLQKFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQ
DLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISR
IKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDF
IESDGETPEDQVSKSLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVT
RERIRQIEAKALRKLRHPNRNSVLKEYIR
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggctaacaacgtactcgaaaatatttatcaacctaacctgggagtgataaat
cagcccgagatggagttagaaatcttaatcgacgacgaagaagaagaagaagatttagta
aatgaaggcgaagaaggagaatttgtagaagctggagctgatgaggcggtaaaagctgga
aaagctgctaaaggtcgtcgtcggacacaagcaaagaaaaagcattacaccgaagattcg
attcgcttgtatttacaggaaatcggtagaattcgtcttctaagagcagatgaagaaatt
gaactcgcacgtaaaattgccgatttgctcgaattagagagagtcggtgacagacttgtg
cagcagttagaacgccaaccccaagaaagcgagtgggcagaagcggtacaattgcctttg
caaaaattccgttatcgccttcatgtcggacgtagggcgaaagacaaaatggttcaatct
aacctgcgccttgtagtttcgattgctaagaagtacatgaatcgcggtttatctttccaa
gatttaattcaggaaggtagtcttggtttgattcgcgctgctgaaaagtttgaccacgaa
aaaggttataagttttctacctacgctacatggtggattcgtcaggctattactcgtgcg
atcgccgaccaatctcggacgattcgtttaccagttcacctatacgaaaccatctcccgc
attaagaaaactaccaagctactttctcaagaaatgggacgcaaacccaccgaggaagaa
atagctactcgtatggaaatgactattgaaaagctgagatttattgctaaatctgctcag
ctaccaatttctttagaaactcctatcggtaaagaagaagattcccgtttaggtgacttt
atcgagtctgatggcgaaacaccagaagaccaagtttctaagagtttactacgcgaagac
ctcgaaaaagttttagatagtctcagccctcgcgaacgcgatgttctcagattgcgctat
ggcttagatgatggtcgcatgaagactcttgaagagattggacaaatttttaacgtaacc
cgcgaacgcattcgtcaaattgaagcaaaagcacttcgtaagttgcgtcaccccaatcgt
aatagcgttcttaaagaatatattcgctag
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