Rivularia sp. PCC 7116: Riv7116_2009
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Entry
Riv7116_2009 CDS
T02364
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
riv
Rivularia sp. PCC 7116
Brite
KEGG Orthology (KO) [BR:
riv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
riv03400
]
Riv7116_2009
DNA repair and recombination proteins [BR:
riv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Riv7116_2009
Archaeal homologous recombinant proteins
Riv7116_2009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
SbcC_Walker_B
Rad50_zn_hook
AAA_29
ABC_tran
AAA_21
HALZ
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
AFY54546
UniProt:
K9RAT3
LinkDB
All DBs
Position
complement(2484127..2487153)
Genome browser
AA seq
1008 aa
AA seq
DB search
MIPVQVTLKNFLSYQDASLDFSGLHTACICGSNGAGKSSLLEAITWVVWGESRAASEDDI
IHTGAKDVRVDFTFEANGEIYRVIRTRRRGSSSALEFQIETQEGFKSLTSKGLRATQEVI
LSHIKLDYDTFINSAYLRQGRADEFMLKRPSERKEILAELLKLNQYDELEDKAKELSRQL
KARGEELERTLGSIKTQLQQQETIAQQKTELETELNELQKLQGFDNIQLQNLQVIQHQRQ
GWEEQLHFVRQQYNNLTQDSKRLESEQSSLKAQLDSLKGLLNREAEIKAGYAHYQTLQSE
EESMGALFAQYTRASQLRQQKLSQLSKHIQGIERQLQQSQAQLEALQQQEKDIERTLKHT
GDVETALEKLKAARGHLSHLDNLQMQVSPLLQQRSLLQTELHRTQAGIVARVEQLETTHR
QLQNQSRRQPQIQQAVMEVETKIEQLDKDKVYLQRLQEKGLEKRSFMERLHAQQREYERL
LGELEQKLQMLQNPDAICPLCERPLDEHHWNRVVDKTEVEYNDTQGQLWVFREQLAVSER
EIQLFRQEYRSVNSKLSPYESLREQKGELAAQLQATSEVDQQIQQITDEKERLEVTLRLG
DYAPQKQKELQELEEYLQQLDYNEQNHALARSEVEKWRWAEIKQGQIKDARKRQAQLAAR
KPEIQTTINQLEHQIELEQVDSEIARAIKELENQITHMGYDNERHNQIRIDVRQAQSWHL
LHQQLVSALSQYPEIKKRSQHVEEALKARLSEKQQLATNINGIIAQLEQTTNPTAQIQDL
EQKLANRRRQLDDKLGHLGRLQQQSQYLENLQIQHTEKQQQLKTVRSQQRVYQELAQAFG
KNGIQALMIENVLPQLEAETNQLLSRLSANQLHVQFVTQRAGKTSKAKKKNAKLIDTLDI
LIADARGTRAYETYSGGEAFRINFAIRLALAKLLAQRAGAALQLLIVDEGFGTQDNEGCD
RLIAAINAIAPDFACILTVTHMPHLKEAFAARIEVNKTQDGSKIRMMI
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgattccggtacaagtaacattaaaaaactttcttagttatcaagatgcaagtttagat
tttagcggattgcatacggcgtgtatttgtggttctaatggagctggcaagtcttcgctt
ttagaggctatcacctgggtagtatggggtgaaagcagagccgcttcagaggacgatatt
atccacactggagccaaagatgtccgagtcgattttacttttgaagcaaacggagaaatt
tatagagtaattcggactcgccgtcggggttctagtagcgctttagagtttcaaattgag
acacaagaggggtttaagtccctgacaagtaaaggtttaagggcgactcaagaggtaatc
cttagtcatattaagctagattacgatacttttattaattctgcttacttgcgtcagggg
cgagctgatgagttcatgctcaagcgtccaagcgagcgtaaagagattttagccgagtta
ttaaagttaaatcaatacgatgagcttgaagacaaagccaaagagttatcccgtcagtta
aaagcgcgaggagaagaattagagcgtactctaggctcgatcaaaactcaactccaacag
caagaaactattgctcaacaaaaaaccgaattagaaactgaactcaacgaactacaaaag
ttacagggttttgataatatccagttgcaaaatttgcaggttatccaacatcagcgacaa
ggttgggaagaacagttacattttgttcgccagcaatataacaatctcactcaagatagc
aagcgtctggaaagcgagcaatctagtttgaaagctcaacttgattctttaaaaggatta
ttaaatcgagaagcagaaatcaaagccggatatgcccattatcaaactctgcaatctgag
gaagaatcaatgggggctttgtttgcacaatatacccgtgcttctcaattacgccagcaa
aaactttctcagctgagcaagcatattcaaggaattgagcggcagttgcagcaatctcaa
gcacaattagaagcgctacagcaacaggaaaaagatatcgagcggactctcaagcatact
ggtgacgtagaaacagcgctagaaaaattgaaagcggctcgcgggcatttaagccattta
gataatttgcaaatgcaggtttctcctttgttgcagcagcgctccttattgcaaaccgag
ctacatcgcactcaagcagggatagtagcccgagttgaacagctagagactacacataga
caactgcaaaaccaatctcgcaggcaaccgcaaatccagcaagcggttatggaagtagaa
acgaagattgaacagttagataaagataaggtttatctgcaaagactacaggaaaaagga
ctggaaaaacggagttttatggagcgtttgcacgctcagcagcgcgaatacgaacggctc
ttaggtgagttagaacaaaaattgcaaatgttgcaaaaccccgatgcgatttgtccttta
tgcgagcgtcctttagatgagcatcactggaatcgagtagtggataaaactgaggttgaa
tacaacgatactcaggggcaattatgggtatttcgcgaacagctagcagtctcagagcga
gaaattcagctatttaggcaggaatatcgcagtgttaacagtaaattatctccctatgaa
tctttacgcgagcaaaaaggagaattagccgcacaactgcaagcaactagtgaagttgac
caacagatacagcaaattactgatgaaaaagaaagattagaagtaactttgcgcctaggt
gattatgccccccaaaagcaaaaagaattgcaggagttagaagagtatttacaacagctt
gattacaacgaacagaatcatgctttagctcgtagcgaagttgaaaaatggcgatgggca
gaaattaaacaaggacaaattaaagatgcacgcaagcgacaagcgcagttagcagcgaga
aaaccggaaattcaaacaactattaatcaattagaacatcaaatcgaattagagcaagtt
gattccgaaattgccagagctatcaaagaattagagaatcaaattactcatatgggttac
gataacgaacgtcataaccaaattcgcatagatgtaagacaagctcaatcttggcatttg
ctgcatcagcaattagtttcagccctttcccaatatcccgaaatcaaaaagcgatcgcaa
catgtagaggaagctttaaaagctaggttgagcgaaaaacagcagttagcgacaaatatt
aacggtattattgctcagcttgaacaaaccaccaaccccactgctcaaattcaagattta
gaacagaaattagctaaccgtcgtcgtcaactcgacgataaactcggtcatttaggacgt
ttacagcagcagtctcaatatttagaaaatttgcaaattcagcataccgaaaagcaacag
caactcaaaacagtgcgatcccagcagcgggtttatcaggaattagcccaggcatttggt
aaaaatggtatccaagcattaatgattgaaaacgtcttgccacagcttgaagccgagaca
aatcaattactttcccgactaagtgccaatcaattacacgtacaattcgttacacaaagg
gcgggtaaaaccagtaaagccaaaaagaaaaatgccaaattaatagacaccttagatatt
ttaatcgccgatgctagaggcacccgagcctacgaaacctattctggtggagaagctttt
agaattaactttgcaattcgtttagcattagccaaattactagcgcagcgagccggagca
gcattgcaattactgatagttgatgaaggattcggtactcaagataatgaaggatgcgac
agattaatcgcagcaatcaatgccatagctcccgactttgcctgcattctcacagtaact
catatgccccacctaaaagaagccttcgccgctcgcattgaagtcaataaaactcaagat
ggttctaaaatacggatgatgatttga
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