Rivularia sp. PCC 7116: Riv7116_5544
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Entry
Riv7116_5544 CDS
T02364
Name
(GenBank) RNA polymerase sigma factor, cyanobacterial RpoD-like family
KO
K03086
RNA polymerase primary sigma factor
Organism
riv
Rivularia sp. PCC 7116
Brite
KEGG Orthology (KO) [BR:
riv00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Riv7116_5544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
riv03021
]
Riv7116_5544
Transcription machinery [BR:
riv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Riv7116_5544
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AFY57913
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All DBs
Position
6973028..6974164
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AA seq
378 aa
AA seq
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MNIAQLGTMESMQKVADKNQSEAVNVLEVVTDEEALIAQNIDTQASNGDDLAAAQPTGYN
KTEYDDAVGAFFKEMARYPLLKPDEEVELARRVRILEEVRQAQAAAQEKLGYFPDKAAIA
KEMGIVQKQLEHRLYQGKVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRA
TEKFDPDKGYKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLA
RNPTEEELAEVLDIPANQLRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNQSPEARM
NESMMRQEIWEVLGDVLTPREKDVISLRYGLTSSEPCTLEEVGNMFNLSRERVRQIQSKA
MRKLRRPHIAKRLKGWLI
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgaatattgcacaactgggaacaatggaaagtatgcagaaagttgctgataagaatcaa
tcagaagcagttaacgttttagaagtagtgacagacgaggaagctttaattgctcaaaat
attgatacgcaagcaagcaatggggatgatttagcagcagcgcaacctacaggatataac
aaaactgagtacgatgatgctgtaggggcattttttaaagaaatggcgcgttaccccttg
ctaaagcccgacgaagaagttgaattagctagaagagtacgtatcctcgaagaagttagg
caagcacaagccgcagcccaagaaaaattaggatatttccccgataaagccgctattgcc
aaagagatggggattgtccaaaagcaattagaacatcgcttataccaaggaaaagtagcg
aagcggaaaatgattcgttctaatttgcgtcttgtggtttccatcgctaagcgatatctc
aatcgtggagttccctttttagatttgattcaagaaggggcaatgggtttaaaccgcgct
actgaaaaattcgatccagataagggatataaattttcaacctatgcttattggtggatt
cgtcaagcaatcaccagagcgatcgctaatgatgcgagaacgattcgtttacccatacat
attgtagaaaaacttaacaaactcaaaaaagctcaaagagaattaaaacaaaaattagcg
cggaatcccactgaagaagaattggctgaagttttagatattccagccaaccagttgcgt
caattacagcaattgcgtcgtcaagcgctttcattgaatcatcgcgtcggtaaagaagaa
gacaccgagctaatggatttactggaagatgaagacaaccaatctccagaagcaagaatg
aacgaaagcatgatgcgtcaagagatttgggaagttttaggagacgtattaactccacgg
gagaaagacgtaatttccttacgctatggcttaacaagtagcgagccttgtactttggag
gaagttggcaatatgttcaatctttctcgcgagagggtaagacaaattcaaagtaaagca
atgcgaaaattgcgtcgccctcatattgccaagcgtttaaaaggttggttgatatag
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