Rivularia sp. PCC 7116: Riv7116_6806
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Entry
Riv7116_6806 CDS
T02364
Name
(GenBank) DNA/RNA helicase, superfamily I
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
riv
Rivularia sp. PCC 7116
Pathway
riv03420
Nucleotide excision repair
riv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
riv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Riv7116_6806
03430 Mismatch repair
Riv7116_6806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
riv03400
]
Riv7116_6806
Enzymes [BR:
riv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Riv7116_6806
DNA repair and recombination proteins [BR:
riv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Riv7116_6806
MMR (mismatch excision repair)
Other MMR factors
Riv7116_6806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
AAA_30
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AFY59122
UniProt:
K9RPU2
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All DBs
Position
8571460..8573955
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AA seq
831 aa
AA seq
DB search
MSDANSIHPVPENALSVTQLPMLYTSSRHTEIANIRDSLRSGQQPMADWKGGPLAVSAVP
GAGKSTGMAAAAAIAIARQYENRDTLRPKIRRQLVVVTFTRSAAANIKAKIRKYLREGLS
LPQTGFVVYTLHGLALNIASRHPELSGLELDYVTLITPNQSHRFIRTAVEKWIANNPRLY
AQLMEGIQFDGEETERLRRQSVLRTEVLPELATAVIHEAKSSGMTPEDLHQLSHQSTDAY
QVLKIAAGLYEQYQTLMKDRDFIDYDDMILAALRVLENESARKIEQKQVFAVFEDEAQDS
SPLQTRLLEILASGEEGGEGVEGEEGENSLAITNYQLPITNSQIPNSQINLIRVGDPNQA
INSTFTPADPIYFRTFCQECDSKGLLATMNQAGRSSRIIIETANFALEWVNSLYQSKHTS
PSPHSSPSTSSPFRNQKILPVDANDPQPNANPAAIGSGVEIYTPSDIHNTVELLSKRIIE
LFPEDNENNGSAAILVRENRQGNWLSQALRPICKKHNILLYDVGEQDRHSHVPEEILAIL
QFCDRPHSPDFLKATLGVLVKRRLIEPQDLNALASLPEEFLYPSPLAAPQTEAVKKTAEF
CRDLLNARLQLPLYQLISFIALKLDYQQAELATADKLSERINQQIAGEISLGAMLRILSE
IVSSERFEPVDTEDSEARYTRRNQLTIITMHKAKGLDWDYVFLPFLHENLIPGKFWVPPQ
RKFLGDFTLSEVARAQIRASLHGETKLPDVIEAWEQAKHLKIAEEYRLLYVAMTRAKRLL
WLSAAKKAPFTWSKPDNLQEQPACPVFNALKREFTECIVEEKNQVLTSTRI
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgctaattccattcatccagtgccagaaaatgctttgtcagtgacgcaatta
ccgatgctgtatacatcttcgcgtcatacagagattgcaaatatccgtgattccctacgt
tccggacaacaaccaatggcagactggaagggtggtcccttagcagtatctgcggtaccg
ggcgcgggtaaatctacgggcatggcagcagcagcagctattgcgatcgcgcgtcagtat
gaaaatcgcgataccttacgtccgaaaattcgccgtcaactagtagttgtcacctttact
cgttctgctgctgctaatattaaagccaaaatccgtaaatatttaagagaaggtttatct
ttacctcaaacgggttttgtggtatacacgctgcacggtttagcgttaaatattgccagc
cgccaccccgaattatccggtttagaactcgactacgtcaccttaattactcccaaccaa
agccaccgcttcattcgtaccgcagtcgaaaaatggattgcaaataatccccgactctac
gctcaattaatggaaggaatacaatttgacggtgaagaaacagaaagattgcgtcgtcaa
tcggtattaagaacagaagtattgccagaattagcaacagcggtaattcatgaagccaaa
agttcgggaatgacacccgaagatttacatcaactaagccatcaaagcaccgatgcatat
caagtcttgaaaatagccgcaggattatacgagcaatatcaaacgttgatgaaggataga
gattttatcgactatgacgatatgatattagccgctttgcgagtcttggaaaacgaaagc
gccagaaaaatcgagcaaaagcaagtatttgccgtatttgaagacgaagcacaggattca
agcccgcttcagactaggttgttggaaatattggcgagtggggaagaggggggagagggg
gtagagggggaagagggggagaattcacttgcaattaccaattaccaattaccaattacc
aactctcaaattcccaattcccaaatcaacttaattcgcgttggcgatccaaatcaggca
attaactctacttttacacctgccgatccaatttattttcgtacattttgtcaggaatgc
gattcaaaaggacttctggcgacgatgaatcaagccggacgcagtagtagaattattatc
gaaactgcaaactttgctctcgaatgggtaaacagtctctaccaaagcaaacatacttcc
ccctctccccactcttccccctctacctcttcccccttccgcaaccaaaaaattcttccc
gtagatgccaacgatccacaaccgaatgcgaatcccgcagcaatcggaagcggcgtagaa
atttacacgccgagcgatattcataataccgttgaattactgtcaaaaagaattatcgaa
ctattcccagaagataatgaaaataacggcagcgcggcgatactagtaagagaaaaccgt
caaggaaactggttaagccaagcactgagaccaatttgcaaaaagcataatattttactt
tatgacgtaggcgaacaagaccgacattcccacgtaccagaagagatattggctatttta
caattttgcgatagacctcattctcccgattttctcaaagctactttaggggttttagtt
aaacgaagattaatcgaaccccaagatttaaatgctttagcttccttacccgaggaattt
ttatatccttctcccctagcagcaccacaaaccgaagccgtcaaaaaaactgctgaattt
tgtcgcgacttactcaacgctcgtttacaactaccgctttatcaactcatatcatttatt
gctttaaaactagactatcaacaagcagagttagcaaccgccgataaactttcagaaaga
attaaccaacagattgccggtgaaatttcattaggggcaatgctgagaatacttagcgaa
atcgttagctccgaacgctttgaaccagtagacaccgaagactcagaagcgcgttatacc
agacgcaatcaactgacaataattaccatgcacaaagccaaaggcttagattgggattat
gtatttttgccgtttctccacgaaaacttaatacctggaaaattttgggtaccaccgcaa
agaaaattcctcggcgactttaccctatcagaagtagctcgcgctcaaatccgcgcttcc
ctacacggagaaacaaaattaccagacgtaatcgaagcatgggaacaagccaaacatttg
aaaatagccgaagaataccgcttgctttacgtcgccatgacaagagcaaaacgattgttg
tggttatccgcagccaaaaaagccccatttacctggagtaaaccggataatttgcaagag
cagccagcttgtccagtttttaatgccttgaagcgggagtttaccgaatgtattgtggaa
gagaaaaatcaagttttaacatcaacaagaatttaa
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