Roseburia intestinalis XB6B4: RO1_01000
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Entry
RO1_01000 CDS
T02597
Name
(GenBank) Superfamily II DNA and RNA helicases
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rix
Roseburia intestinalis XB6B4
Pathway
rix03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rix00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RO1_01000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rix03019
]
RO1_01000
03009 Ribosome biogenesis [BR:
rix03009
]
RO1_01000
Enzymes [BR:
rix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RO1_01000
Messenger RNA biogenesis [BR:
rix03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RO1_01000
Ribosome biogenesis [BR:
rix03009
]
Prokaryotic type
rRNA helicases
RO1_01000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
AAA_30
DUF2009
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CBL10931
UniProt:
D4KU91
LinkDB
All DBs
Position
89793..91400
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AA seq
535 aa
AA seq
DB search
MERKYMETVRFDQLDLYPQVLRAIAEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKT
ASFGIPVLHKVDPNNKKTQVIILSPTRELAIQVADEIRKLAKYMHGVKILPVYGGQEISR
QIKALKGGAQIIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYI
PEEGRQTVLFSATMPKPILDITKKYQHDAVTIKVVKKELTVPNIEQYYYDVKRKDKIEVL
TRLLDYYNPKLSLVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKT
EILIATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYK
LKDIMRYCKTKIVAMPIPSTDDVAQIKAEKVMEEIGRIIDEENLKDTIDIIEKQINESDY
TAMDIAAAFLKQALGQINLDNDREDSFDFDNTGAEEGMVRLFINIGKKDRVKPGDILGAV
AGESGMPGKLVGAIDMYDKYTFVEVPREYGKEVLEAMKNAKIKGRSVNMEPANQK
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggaaaggaaatatatggaaacagttagattcgatcagttagatttatatccgcaggta
ttgcgtgcgatagcagaaatgggatttgaagaggcaacaccgatccagagtcaggcaatt
ccggttgtgatgtccggtgtggatgtcattggacaggcacagacaggaaccggaaagacg
gcatcatttggaatcccggtactgcataaagtagatccgaataataaaaaaacacaggtt
atcatcttatcaccgacaagagagcttgccatccaggtggcggatgagatccgtaaactt
gcaaaatatatgcacggtgtaaagatccttccggtgtacggcggacaggagatcagccgt
cagatcaaggcattgaagggtggggcacagattattatcggtacaccgggacgtgttatg
gatcatctgcgcagaaagacgatccgctgtgaggcagtgaacacgatcgtacttgatgag
gcagacgagatgttaaacatgggattccgtgaggatattgagacgatcttagagtatatc
ccggaggaaggacgtcagacggtgttattttctgcgaccatgccaaagccgatcttagat
atcacgaagaaataccagcacgatgccgtgacgatcaaagtggtaaaaaaagagctgacc
gttccgaatattgagcagtattactatgatgtaaagagaaaagacaagatcgaagttttg
accagacttcttgattattataatccgaaactctctctggtgttctgtaacacaaaacgc
atggtggacgaactgactgaggaactgcagggacgcggttattttgcagagggactgcac
ggagatatgaagcagacacagcgtgaccgtgtgatgcgcggtttccgtaccggaaaaaca
gagatcctgatcgcgaccgatgttgcagcgagaggtatcgatgtggatgatgtggaagcg
gtattcaattatgatattccacaggatgacgaatattatgttcatcgtatcggaagaacc
ggacgtgccggaagaaccggacgtgcgtttactttcgtcaaaggcaaagaagtatataaa
ttaaaagatatcatgcgttactgcaagaccaagatcgttgcaatgccaatcccgtccacg
gatgatgtggcacagatcaaggctgagaaggtcatggaagaaatcggaagaattatcgac
gaggaaaatttaaaagatacgatcgatatcatcgaaaagcagatcaatgaatccgattat
accgcaatggatattgctgcagcattcttaaaacaggcgttgggacagatcaatcttgac
aatgacagagaggactcttttgattttgataataccggagctgaagagggcatggtgcgt
ctgtttatcaacatcggtaaaaaagaccgcgtgaaaccgggcgatatcttaggtgcggtt
gcaggcgaatccggcatgccgggtaaacttgtcggagccattgatatgtatgataaatac
acattcgtggaagtgccgagagaatacggaaaagaagttttagaagccatgaaaaatgca
aagatcaaaggccgctccgtcaatatggaaccggcaaaccagaaataa
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