Roseburia intestinalis XB6B4: RO1_01900
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Entry
RO1_01900 CDS
T02597
Name
(GenBank) uncharacterized domain HDIG
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
rix
Roseburia intestinalis XB6B4
Brite
KEGG Orthology (KO) [BR:
rix00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rix03019
]
RO1_01900
Messenger RNA biogenesis [BR:
rix03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RO1_01900
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Ortholog
Paralog
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
HDOD
Cas3_HD
TraI_2
Motif
Other DBs
NCBI-ProteinID:
CBL11003
UniProt:
D4KUG3
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All DBs
Position
complement(173843..174793)
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AA seq
316 aa
AA seq
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MKYIESLREGERINEIYLCKVKQSALTKAGKPYDTLILQDKTGTLDAKIWEPGSVGIDEF
DSLDYIAVMGDITSFQGNLQLNVKRVRKVQEGEYDPKDYLPVSDKDIDQMYEELKGLIAS
TKEVHLKKLLESFFVEDADFEKRFKFHSAAKTVHHGFVGGLLEHSLSVAKHCDYFAGCYP
MLNRDLLITAAIFHDIGKLEELSTFPENDYTDDGQLLGHIIIGTEMVGDRIRTIPDFPKG
LASELKHCILAHHGELEFGSPKKPALPEALALSFADNIDAKMETVREIFNNVPENNQEWQ
GYNRLLESNIRRSGKL
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgaagtatattgagagcctcagagagggcgagcgaattaatgaaatctatctatgtaaa
gtaaaacagtctgcactgacaaaggcaggaaaaccttatgatacattgatcttacaggac
aaaacgggcacactggatgcgaagatatgggagcctggttctgttggaatcgacgagttc
gattcactggattacatagccgtaatgggtgatatcaccagctttcagggcaatttacag
ctgaatgtaaagcgtgtccgcaaggtgcaggaaggggagtatgatccaaaagattacctt
ccggtcagcgataaggatatcgaccagatgtatgaggagttaaaaggcctgattgcgagc
accaaagaagtgcatttaaagaagctgttagagagcttttttgtggaagatgcagatttt
gaaaaacgctttaaattccactctgctgcaaagactgtgcaccacggatttgtcggtggt
ctgcttgagcacagcttaagtgtggcaaagcactgtgattattttgcaggctgttatccg
atgttaaaccgcgatcttttgatcacggcagctattttccatgatatcggaaaattagag
gagctttccacattcccggaaaatgattacacggatgacggtcagcttttaggacatatt
attatcggaaccgagatggtcggtgacaggatccgcacgatcccggattttccaaaggga
ctggcaagcgagttaaagcactgtattttagcacatcacggcgagttagagtttggttca
ccgaaaaaaccggcgctgccggaggcattggcactcagttttgcggataatatcgatgca
aagatggagacggtgcgcgaaatctttaacaacgtgccggaaaataatcaggaatggcag
gggtacaaccgtctgcttgagagcaatatcagacgctccgggaaattataa
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