Roseburia intestinalis XB6B4: RO1_06010
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Entry
RO1_06010 CDS
T02597
Name
(GenBank) haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rix
Roseburia intestinalis XB6B4
Pathway
rix03420
Nucleotide excision repair
rix03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RO1_06010
03430 Mismatch repair
RO1_06010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rix03400
]
RO1_06010
Enzymes [BR:
rix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RO1_06010
DNA repair and recombination proteins [BR:
rix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RO1_06010
MMR (mismatch excision repair)
Other MMR factors
RO1_06010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAD_2
Hydrolase
UvrD_C
UvrD_C_2
AAA_19
Viral_helicase1
HAD
UvrD-helicase
Hydrolase_like
DEAD
Acid_phosphat_B
SLFN-g3_helicase
CYP38_PsbQ-like
ResIII
FlaC_arch
NACHT
Motif
Other DBs
NCBI-ProteinID:
CBL11345
UniProt:
D4KVF5
LinkDB
All DBs
Position
594706..598491
Genome browser
AA seq
1261 aa
AA seq
DB search
MNIKKIKAVIFDMDGTLIDTEKYYRMFWPKALAHFGYEMTDEQALTMRSLGQPYAPQHLK
EMFHDPDLDYTAIRNYRKQIMGECLKKNGIEIKKGAIELLDYLKAQGIRRAIATATDQVR
TDQYLKQLCLYGYFDQIICATMVEHGKPSPDIYQYACRQLALLPEECIAVEDSPNGVCSA
YGAGCNVVMVPDQTEPDEALRGKLATRVDSLDEIIKLFKKFPGLTKEDEEHQLSKIIEIA
QDNLDHAKEDIRKINEDLADLLEVYDAKDKEGLALWNNATARLKEDERELVRYEKARKKP
YFGRIDFRDPKAKADEAYYIGRVGITDSSSDPVVLDWRAPIASVYYESRMGTCQYTVSSE
GTFEIDLKRKRTYEIENDRLKDFFDSDVVANDELLTKYLAKNKKAVLGEIIATIQKEQNL
IIRRSPKTNIIVQGVAGSGKTTVAMHRISYILYNYKDDFRPEDFYIIGSNRILLNYITSV
LPELDVYGIRQMTMEQLFIRLLYEDWDETRFSYHNIDKTDAKNSIKGGTAWFLDLEKFCQ
NYENQSIAKEDIYMEKTGNLLLSKEQIGRYLKNNPKVSMQSKILMLNEILYAKYENEVSG
KSVTFPPKEKKILDKKYASYFGDGKWRESVFTFYREFLLAQQEAGKEVDVPENSFDVYDL
AALAYIYKRIKETDPVREASHVVIDEAQDFGMMSYRCLHYCLYGCTYTIMGDTSQNIHFE
YGLNDWEELKKLILTGTFDAFGLLRKSYRNTVEISEFANEILRHGDFSIYPVEPIIRHGN
PVQTVACPDENKLLADTVTTIKKWQQDGYETIAVICRDEAEAAQAAEELKKYVKIVETDL
EKAEFGDGVMVLPVSYTKGLEFDAVLLFDPTQEKYPSDNGHVKLLYVAATRALHELVVLY
RGKLTGILADKVPEGKHMKEFAAETLTKAAEFERVQHTEKEIEQQRRIEGAKDMAEREYI
GPKRIVIKPQGKENEAEARGKTLTGQKMTSAYKRAVAAPVRKAADNSGKNEGNHTEEIIL
SPYEFGAIPDNAILRVKGHSRNNFAIKWIKKTKSYVELSSMYGLLRITPITPEVIRVSFV
KGVTEKIGDTAWKGKADTAFTWSAKESKMLVEIATEKVTVRIAKNNGAVCFYNEKKQLLL
TEKAEEPRFQEGGCNWTFFEWEKSEHLKAKGLLAADFMDVTAKAKYVSYGGKKLRMPLIL
SEKGYGLAIASKGTVLFCGIRTFGPYIMAEGSQSDYYFISEKNREKLVEIYQKTLTLQPK
F
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atgaatataaaaaagataaaagccgtaatttttgatatggacggcacactgatcgacacg
gaaaaatattaccgcatgttctggccaaaggcattggcgcattttgggtatgaaatgacg
gatgaacaggcacttaccatgcggtcacttgggcagccatatgcaccacagcatttaaaa
gaaatgtttcatgatccggatctggattatacggcgatacgaaattatcgcaagcagatc
atgggagagtgtttgaaaaaaaatggaattgagatcaaaaaaggtgcaatcgaacttctt
gattatttaaaggcacagggtattcgccgtgcaatcgcgacggcgacagatcaggtgcgt
acggaccagtatttaaagcagctttgtctttacggttattttgatcagatcatctgtgca
acgatggtggaacatggaaagccttcaccggatatctatcagtatgcatgcagacagctt
gcgcttttgccggaggaatgtatcgcagttgaggattccccaaacggtgtatgcagtgct
tatggtgcaggctgtaatgttgtgatggtgccggatcagaccgaaccggatgaggcattg
cgtgggaagctggcaacgagggtggattcgttagatgagatcataaagctgtttaagaaa
ttccctggtctgacaaaggaagacgaggagcatcagctcagtaaaatcatagagattgcg
caggataatttagatcatgcgaaagaagatatccggaagatcaatgaagatcttgccgat
ctcctcgaagtctacgatgcaaaggataaggaaggactggcactctggaacaatgcaacc
gcgcggttaaaggaggatgaacgggaactggtgcgctatgaaaaggcgcgtaagaagccg
tattttgggcgcattgatttcagggatccaaaggcgaaagcggatgaggcttattatatt
ggaagagtcggcatcacggacagcagctctgatccggtcgtgcttgactggcgggcaccg
attgcatcagtatactatgagagcaggatgggaacatgccagtataccgtgagctctgag
gggacatttgagattgatctgaaacgcaagcgcacttacgagattgaaaatgaccggtta
aaagatttctttgattcggatgtggtcgccaacgatgaactgctgacaaaataccttgca
aaaaataaaaaggcagttttgggcgagatcattgcgacgatccagaaagagcagaacctc
attatccgccgttcgccgaaaacgaacatcattgtgcagggtgtcgccggttccggaaaa
acgacagtggcgatgcaccgtatttcctatattctatataattataaagatgatttccgc
ccggaggacttttatattataggaagcaaccggatccttttgaattatattacaagtgtt
ctgccggaacttgatgtgtatggaatccgtcagatgacgatggagcagcttttcatccgc
cttttgtatgaggattgggacgagacgcggttttcttaccacaatatcgacaagacagat
gcaaaaaacagcatcaagggcggcacggcgtggtttctggatttagaaaaattctgccag
aactatgagaatcagtcgatcgcaaaagaagacatttatatggaaaagactggaaatctc
ctgttatcaaaggagcagatcggacgttatttaaaaaataatccgaaagtttccatgcag
agcaagatactcatgttaaatgagattttgtatgcaaaatatgaaaatgaggtttccggg
aagtccgtgacttttccgccaaaagagaaaaagattttagacaaaaaatacgcgtcttat
tttggggatggaaaatggagagaatctgtatttactttttacagagaatttttacttgcg
cagcaggaggcaggaaaagaagtcgatgtgccggaaaactcgtttgatgtctatgatctt
gcggcgcttgcatatatttacaagaggatcaaagagacggatccggtgcgtgaggcgagc
catgtagtgattgatgaggcgcaggactttggcatgatgtcatacagatgcctgcattac
tgtctgtatggctgtacttacacgatcatgggtgatacatcccagaatattcattttgag
tatggtttaaacgactgggaagaattaaaaaaattgatcctgaccgggacattcgatgcg
tttggacttctgcggaaaagttaccgtaatacagtggaaatttctgaatttgcaaatgag
atcctgcgtcatggggatttttctatttatccggtggaacctattatccgtcatggaaat
ccggttcagacggtggcatgtccggatgaaaataaattgcttgcagataccgtcaccacg
atcaaaaaatggcagcaggacggttatgagacgatcgctgtgatctgtcgtgatgaggcg
gaagcggcacaggctgcggaagaactaaagaaatatgtaaaaattgtagaaacagatctg
gaaaaagccgagttcggggatggcgtcatggtgcttcctgtctcctacacgaaaggactt
gaatttgatgctgtgctgctgtttgatccgacgcaggaaaaatacccgtcggataacggg
catgtcaaacttctgtatgtggctgcgacccgcgcactgcatgaacttgtggttttgtac
cgtggaaaactgaccgggatccttgccgacaaagtcccggaaggaaaacatatgaaagag
tttgcggcagaaaccttgacaaaagcagcggaatttgaacgggtgcagcacacggaaaaa
gagatcgaacagcagcgcaggatcgagggcgcaaaggatatggcagagcgcgagtatatc
ggtccgaagcgcattgtcattaaaccgcaggggaaagaaaatgaggctgaggcaagagga
aaaacattgacagggcagaaaatgacatctgcctataagagagctgtggcagcgccagtc
agaaaagcagcagacaactctggaaaaaacgaaggaaaccatacggaggaaatcatcctg
tctccgtacgaatttggcgcgatcccggacaatgcgatcctccgtgttaaaggccattcc
cgaaacaattttgccatcaaatggatcaaaaagacaaaaagctatgtggaactttccagt
atgtacggacttttacgcatcacaccgatcacaccggaggtgatccgggtcagtttcgtg
aagggtgtcacggaaaaaattggcgataccgcatggaaaggaaaggcggatacagcattt
acatggagtgcaaaagaatccaaaatgctggtagaaattgcaacggaaaaagttaccgtg
cgcattgcaaaaaataatggtgcggtctgcttttacaatgagaaaaagcagttactgctt
acggaaaaagcggaggaaccgaggtttcaggaaggcggatgtaactggacattttttgaa
tgggaaaagtccgaacatttgaaagcaaagggactgcttgctgctgattttatggatgtg
acagcaaaagcaaaatacgtttcctatggtgggaaaaagttaagaatgccgcttatttta
tcagagaaaggatacgggcttgccattgcatcgaaaggaactgtgctgttttgtgggata
cggacttttggaccttatatcatggcagaggggagtcagagcgattattattttatcagt
gaaaagaaccgtgaaaaattagttgagatctaccagaaaacgttgactttacaaccgaag
ttttaa
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integrated database retrieval system
