Roseburia intestinalis XB6B4: RO1_09170
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Entry
RO1_09170 CDS
T02597
Name
(GenBank) Superfamily I DNA and RNA helicases
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rix
Roseburia intestinalis XB6B4
Pathway
rix03420
Nucleotide excision repair
rix03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RO1_09170
03430 Mismatch repair
RO1_09170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rix03400
]
RO1_09170
Enzymes [BR:
rix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RO1_09170
DNA repair and recombination proteins [BR:
rix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RO1_09170
MMR (mismatch excision repair)
Other MMR factors
RO1_09170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_11
DEAD
ResIII
AAA_14
OapB
ChitinaseA_N
ADDB_N
Motif
Other DBs
NCBI-ProteinID:
CBL11597
UniProt:
D4KW57
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All DBs
Position
931136..932977
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AA seq
613 aa
AA seq
DB search
MSFNASQTRAIHHKNGPMLVLAGPGSGKTLVITERTKYLIEECGIDPAQILVITFTKAAA
TEMKRRFQRKMNRSCPVTFGTFHAVYFAILKHAYNYSADNIAREEQRYQCMREIIAKEHL
TYEDETEFITSLLGEISLVKNSGIEIANYYSKNCAETVFRKVYRQYHEFLYKNRLIDFDD
MLVYTKELFEQRADILAAWQNKYRYILIDEFQDINRIQYDIIKMLAGKRKNLFIVGDDDQ
SIYRFRGAKPEIMLHFKDDYPEAETVLLDVNYRSVKNIVTSAGYLIGHNKERFQKKIEAA
DQGDIPVEWQLFESQRKENARIIWDIQEAVEKGAKYEEFAVLFRTNTQPRLLMEQLMEYN
IPFRTRDTVPNLYEHWIAKDIFAYIRIAMGSRERRDFLQIMNRPKRYISRESLDEETVAF
DVWEWYYEEQPWVAKRIEKLEGDIRMLERLSPYAAINYIRKAIGYDEFCTEYADYRRIKA
DDLFDVLDELLDAAREYKTYDAWFDHIENYTKELQEFYRVQNQNPNSVALATLHSAKGLE
YENVYIIDVNEGVMPYKKAVLEPEVEEERRMFYVGMTRAKKNLHLFSVRQLNHKDAEISR
FIKEAQPPEKKKD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgagctttaatgcatctcagacacgggcaatccatcacaaaaacggaccaatgctcgtt
ctcgccggaccgggttccggaaaaactcttgtaatcacagaacgtacaaaatatctgatc
gaagaatgtgggatagatccggcacagatccttgttatcacatttaccaaagccgctgca
acggagatgaagcgcaggtttcagcggaaaatgaaccggtcatgtccggtgacatttggc
acgtttcatgcagtttattttgccattttaaaacatgcatataattacagcgcagacaat
attgccagggaggaacagcgctaccagtgtatgcgtgagatcatagcgaaagaacatctg
acctatgaggatgagacggagtttatcacatctctgttaggggagatcagtctggtcaaa
aattccgggatagaaatcgccaactattattcgaaaaactgtgcggagaccgtgttccga
aaggtttatcgccaatatcatgaatttttgtacaaaaacagactgattgattttgatgac
atgttagtatacacgaaggaactttttgaacagcgtgccgatattcttgccgcatggcag
aataaataccgctatattttgatcgatgagtttcaggacatcaaccggatccagtatgac
attataaaaatgttagcgggtaagcggaaaaatctgtttatcgtgggggatgatgaccag
tcgatctaccgtttccggggtgcgaagccggagatcatgttacactttaaggatgattac
ccggaggcggagacggttcttttagatgtgaattaccgttccgtaaaaaacattgtgaca
agtgccggatatctcatcggccacaataaggaacgctttcagaaaaaaatagaggcggcg
gatcagggggatatcccggttgaatggcagttgtttgaaagccagcgcaaagaaaatgca
agaatcatctgggatattcaggaggcggtggagaaaggcgcaaaatatgaagaatttgca
gtgcttttccgcaccaatacacagccgcgacttctgatggaacagctgatggagtataat
attccattccgaacgagagataccgtgccgaacttatacgagcactggatcgcaaaagat
atttttgcatacataaggattgcgatgggaagcagggaacgcagggatttcctgcagatc
atgaaccgtccgaaacgctatatcagccgggaatcgctagacgaggagaccgtggcattt
gatgtgtgggagtggtactatgaggaacagccgtgggtggcaaagcgcatcgaaaaatta
gagggcgatatccgtatgttagagagattaagtccgtatgcggcgatcaattacatccgg
aaggcaatcggatatgatgagttttgtacagaatatgcggattacagacgtattaaagcg
gatgatctgtttgatgttttggatgagctcctggatgcagcgagggaatataagacttat
gatgcgtggtttgaccacattgaaaattacacaaaagagctgcaggaattttaccgcgtg
cagaatcagaacccgaacagtgttgcgttagcaacattacatagtgcaaaaggtctggaa
tatgaaaatgtctatatcattgacgtcaatgagggcgtcatgccatacaaaaaagcagtg
ctggaaccggaagtggaagaagagcgaaggatgttttatgtaggaatgacgagagcaaaa
aaaaatctgcatcttttttcagtcagacaactgaaccataaagatgcagaaatttcccgt
tttatcaaagaagcgcagccaccggaaaagaagaaggattaa
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