Roseburia intestinalis XB6B4: RO1_09870
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Entry
RO1_09870 CDS
T02597
Name
(GenBank) exonuclease, DNA polymerase III, epsilon subunit family
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
rix
Roseburia intestinalis XB6B4
Pathway
rix03030
DNA replication
rix03430
Mismatch repair
rix03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RO1_09870
03430 Mismatch repair
RO1_09870
03440 Homologous recombination
RO1_09870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rix03032
]
RO1_09870
03400 DNA repair and recombination proteins [BR:
rix03400
]
RO1_09870
Enzymes [BR:
rix01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RO1_09870
DNA replication proteins [BR:
rix03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RO1_09870
DNA repair and recombination proteins [BR:
rix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RO1_09870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
PHP
DNA_pol3_a_NI
RNase_H_2
tRNA_anti-codon
DEDDh_C
DNA_pol3_a_NII
Motif
Other DBs
NCBI-ProteinID:
CBL11653
UniProt:
D4KWB3
LinkDB
All DBs
Position
993740..996457
Genome browser
AA seq
905 aa
AA seq
DB search
MTKMFFDVFPTLEVNGDMKKLLSETEVTRVGMNHEKDHIRIYLNGTRLIHKKNIYQLEKN
IHDQIFKNRHMDVKVIEKYQLSEQYTAEKLMDLYKDSILEELKNYSLMEYNLLRSAKMEF
TGDSHLLLTLENTIIAQTRSHEIVEFLEKVVCERCGLDLSVELAFEEPKESKHKKNSDLQ
IQFEIKNILKRVQLHEESAPAKAEEVQTADTSMKTATKEQNHSKESAAGNNAGNANGKGE
NSFGKKEFRKKYDGGSYGGYKKSDNPDVLYGKDFEDETIPIEKIVGEMGEVTIRCQVMTL
ETREIRNEKTIVIMSVTDFTDSIVLKIFTRNDQLPELLEGVKKGAFLKIKGVTTIDKFDS
ELTIGSIVGIKKIPDFTSVRMDTSPEKRVELHCHTKMSDMDGVSEVKDIVKRAMKWGHKA
IAITDHGDVQAFPDANHAISPDDDFKVIYGVEAYLVDDLKDIITNSKNQNLDDTYVVFDL
ETTGFSPDKNKIIEIGAVKVEHGEITERFSTFVNPEVPIPYRIEELTSIRDDMVIDAPKI
ETILPQFMEFCGDAIMVAHNADFDMSFIIKNCERQGIEKEFTIIDTVALARILLPQLNRF
KLDTVAKALGVSLENHHRAVDDAGCTAEIFVKFVKMLHDRGMETLDQVNQMGQASPETIM
KMNTYHAIILATNDIGRINLYRLISLSHLTYYNKRPRIPKSEFVKYREGLLLGSACEAGE
LYRAIVGGRPEEEIIRLVKFYDYLEIQPLGNNEFMLKSDKESVSTIEELQDINRRIVKLG
ETFGKLVVATCDVHFLDPEDEIYRRIIMAGKGFKDADDQAPLYLRTTEEMLKEFEYLGSA
KAEEVVITNPNKIADMCEKIAPVRPDKCPPVIENSDQMLRDICYTKAHRYVWRRASCNRK
GASGS
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaatgttttttgatgtatttccgacactggaagtgaatggagatatgaaaaaa
ctgttatcagagacggaagttaccagggtcggaatgaatcatgagaaagatcatatccgt
atctatttaaatggaacacgtcttatccataaaaagaatatctatcagctggaaaaaaac
atacatgatcagatttttaaaaaccggcatatggacgttaaagtcattgaaaaatatcag
ttgtcagagcagtatactgcagaaaaactgatggatctgtataaggacagtattttagag
gaattaaaaaattacagtctgatggaatataatctgctgcgctccgccaaaatggagttt
acaggagattcccatctgctcctgactcttgaaaacacgatcattgcacagaccagatca
catgagatcgttgaatttttagagaaagtggtgtgtgaacgctgtggactagacctttcc
gtagaacttgcttttgaggaaccaaaagagagcaaacacaagaaaaacagtgatttacag
atccagtttgaaattaaaaatattttaaaacgtgtacagcttcatgaggagagtgcaccg
gcaaaggcggaagaagtacagacggctgatacatccatgaaaactgccacaaaggaacaa
aatcattcaaaagaatctgctgcaggaaataatgcaggaaacgcgaacggaaagggagaa
aattcgtttggtaaaaaagaattccgcaaaaaatatgatggcggatcctacggtggatat
aaaaaatcagataacccggatgtgctctatggaaaagattttgaagatgagacgatccca
atcgagaagattgtcggggagatgggagaggttacgatacgctgtcaggtcatgacactt
gagacgagagagatccgtaatgaaaaaacgatcgtgatcatgtcagtcacggatttcacg
gactccattgttttaaagatttttaccagaaatgaccagcttccggaattgcttgagggg
gtgaaaaaaggtgctttcctaaagatcaaaggcgtcacgaccatcgacaaatttgacagt
gagcttacgataggttcgatcgtcggcatcaaaaaaatcccggattttacctcagtccgt
atggatacgagcccggagaaacgcgtagagcttcactgtcataccaagatgagcgatatg
gatggtgtctctgaggtaaaagatatcgtaaagcgtgcgatgaaatggggacataaggcg
attgcaatcaccgaccatggggatgtacaggcgttcccggatgcaaaccatgcgatctca
ccggatgatgacttcaaggtgatctatggtgtggaggcatatttggtggatgatttaaag
gatatcatcaccaactcgaaaaaccagaatctcgatgacacctatgtggtatttgacctt
gagacgaccggattttcaccggacaaaaataagatcatagagatcggtgcagtgaaagtg
gagcatggtgagatcacagaacgtttttctacattcgtcaacccggaagtgccgatcccg
taccggatcgaggaactgacttccatccgagacgatatggtgatcgatgcaccgaagata
gagacgatcctgccacagtttatggagttctgtggggatgcaatcatggtcgcacacaat
gcagattttgatatgagttttatcatcaaaaactgtgagagacagggaatcgagaaagag
tttacgatcattgatacggttgctttagcacgaattttgctgccacagttaaaccgtttt
aaactcgatactgtagcaaaagcgctgggagtttctctggagaatcaccaccgtgccgtg
gatgatgcgggatgtacggcggagatctttgtgaaatttgtaaagatgctccacgaccgc
ggcatggagactttagatcaggtcaaccagatgggacaggcttcgccggagaccatcatg
aaaatgaacacttatcatgcgatcattcttgcgacaaacgatatcgggcgcatcaatctg
taccgtctgatttctctgtcacatctgacctactataacaagagaccgcgtattccaaag
agtgagtttgtaaaataccgtgaaggattgctgcttggatcagcatgtgaggcgggagaa
ctctaccgtgcaatcgtgggtggacggccggaggaggaaatcataagactggtaaaattt
tatgattatttagaaatccagccgcttggcaataatgagtttatgttaaaaagcgacaag
gaatccgtcagcacgatcgaggaactgcaggatatcaaccgccgtattgtaaaactggga
gaaacgtttggaaaactggttgttgcgacctgtgacgtgcatttccttgacccggaggat
gagatttaccgccgtatcatcatggcgggaaaaggatttaaggatgcggatgaccaggcg
ccgctttaccttcgaacgacagaggagatgctaaaggaatttgaatatcttggctcggca
aaagcggaggaagtcgtcattactaacccgaacaagatcgcggatatgtgtgagaagatc
gcacctgtgcgcccggataaatgtccgccggtcatcgaaaattctgaccagatgctgcgt
gatatctgttataccaaggcacacaggtatgtatggcgaagagcttcctgcaatcgtaaa
ggagcgtctggatcgtga
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