Roseburia intestinalis XB6B4: RO1_17890
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Entry
RO1_17890 CDS
T02597
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rix
Roseburia intestinalis XB6B4
Pathway
rix03410
Base excision repair
rix03430
Mismatch repair
rix03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RO1_17890
03430 Mismatch repair
RO1_17890
03440 Homologous recombination
RO1_17890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rix03400
]
RO1_17890
DNA repair and recombination proteins [BR:
rix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RO1_17890
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RO1_17890
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RO1_17890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Ribosomal_S7e
Motif
Other DBs
NCBI-ProteinID:
CBL12354
UniProt:
D4KYB4
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All DBs
Position
1792263..1794020
Genome browser
AA seq
585 aa
AA seq
DB search
MEKWFVINKGADFAGIAKRFGISPVTARLIRNREVMGDEAIARYLKGGIGELYDPHLLLD
SDRLTDILVQKISEQKKIRVIGDYDIDGVMSTYILYKGITRCGGSVDFQIPDRMKDGYGI
NDHLIEQADEAGIDTIITCDNGIAAIGEIAHAKSLGMTVLVTDHHEIPYTEERGERHYKR
SEADAIVNPKQMECTYPYKNLCGAAVVWKVIQILYEKCDIAVEESYDFLENVAFATVGDV
MDLTDENRILVREGLKRIHTTMNPGMRALILQNKLEPEQISSYHFGFVLGPCINASGRLE
TAKIALNLFLQEDVKKASEIAAELVDLNAQRKDMTAEGVELAMQQVEEGNTGEKVLVVYL
PDVHESLAGIIAGRIREACHKPTFVLTKSEDGVKGSGRSIEAYSMYEELCKCQELFTKFG
GHPMAAGLSLPEANVEIFREKINACCGLTEEDFIPKIKIDIPMPVDYPDIPLVNELLLLE
PFGKANVKPQFADKNLGIDRAVVVGKNQNVLKLTLKTERGKSISAVYFGDVEEFREYYGR
KYGENEVQQAFLGRTNGIRMSVVYYPEINRYQGNESIQIVIKNYQ
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaatggtttgtaataaataaaggcgctgattttgcaggaattgcaaaacgtttt
gggataagtccggttacggcaaggctgatccggaatcgtgaggttatgggggatgaggca
atcgcaagatacttaaaaggcggaattggggaactttacgatcctcatttacttttggat
tcggaccggttgacggatatattggtgcagaagatcagtgaacagaaaaagatcagggtc
ataggcgactacgatattgatggggtaatgtcgacttatattctgtacaaaggaatcaca
cgctgcggtggcagtgtggattttcagataccggaccggatgaaagatggttacggaatc
aacgatcatctgattgagcaggcagatgaggcgggaattgatacgatcattacctgtgat
aatggaattgcagcgataggcgagatcgcgcacgctaaaagtcttggaatgacagttctt
gtcacagaccatcatgaaataccatatacggaggagaggggagaacgccattataaaaga
agtgaggcggatgccattgtaaatccaaagcagatggagtgtacatatccgtataaaaat
ctctgcggtgctgcagttgtctggaaagtgatacagatcctctatgaaaaatgtgacatt
gcggtggaggagtcctacgattttttggaaaatgtggcatttgcgacggtcggggatgtg
atggatctgacggatgagaacagaatcctggtaagggaaggattaaagcggatccatacg
accatgaatccggggatgcgcgcattgattttacagaataaattagagccggaacagatc
agttcctatcatttcggatttgtgttaggaccatgcatcaatgcaagcggacgattagag
acagcgaaaattgccttaaatcttttcctgcaggaggacgtaaaaaaagcatcggagatc
gcagcggaactggtcgatctgaatgcgcagcgaaaagacatgactgcagagggcgtagaa
cttgccatgcagcaggtggaagagggaaatacgggtgaaaaagtcctggttgtctatctg
ccggatgtgcatgaaagtcttgcaggaatcattgcaggaagaatccgggaggcgtgtcat
aaaccgacttttgtgctgacaaagagtgaggatggggttaaaggctccgggcgctcaatc
gaggcatattcgatgtatgaggaactgtgcaaatgtcaggaattatttacaaaatttggc
ggtcatccgatggcagcaggactttccctgccggaagcaaatgtagagattttcagggag
aaaataaatgcctgctgtggcttgacagaagaagattttattcctaagataaaaatagat
attcccatgcccgtcgattatccggacattccgctggtaaatgaactgttgttgttagaa
ccattcgggaaagcaaatgtaaaacctcagtttgcggataagaatcttggaatcgatcgt
gcggtggtagtcgggaaaaatcagaatgtattaaaactgacacttaagactgaacgtgga
aaatccatatctgctgtttattttggagatgtggaggaattccgggaatattatggaaga
aaatatggggaaaatgaagtgcagcaggcattccttggcaggacaaatggaatccggatg
tctgtggtatattatcccgagataaacaggtatcagggaaatgaaagcatacagattgtg
ataaagaattatcagtaa
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