Roseburia intestinalis XB6B4: RO1_22570
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Entry
RO1_22570 CDS
T02597
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rix
Roseburia intestinalis XB6B4
Pathway
rix03030
DNA replication
rix03410
Base excision repair
rix03420
Nucleotide excision repair
rix03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RO1_22570
03410 Base excision repair
RO1_22570
03420 Nucleotide excision repair
RO1_22570
03440 Homologous recombination
RO1_22570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rix03032
]
RO1_22570
03400 DNA repair and recombination proteins [BR:
rix03400
]
RO1_22570
Enzymes [BR:
rix01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RO1_22570
DNA replication proteins [BR:
rix03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RO1_22570
DNA repair and recombination proteins [BR:
rix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
RO1_22570
NER (nucleotide excision repair)
GGR (global genome repair) factors
RO1_22570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
HHH_5
HHH
XPG_I
HHH_2
Motif
Other DBs
NCBI-ProteinID:
CBL12762
UniProt:
D4KZH2
LinkDB
All DBs
Position
2286631..2289423
Genome browser
AA seq
930 aa
AA seq
DB search
MERTMGEKLVLIDGHSILNRAFFGIPDLTNSEGLHTNAVYGFLNIMFKILEEEQPDYLTV
AFDVSEPTFRHKMFAEYKGTRKPMAQELREQVPLMKEMLKAMGVTTIEKGGYEADDLLGT
IAKQSEQKGLTVSVVSGDRDLLQLATDHIKIRIPKTKRTGTEIEDYNAAEVKEKYQVTPI
EFIDVKALMGDTADNIPGVPGIGEKTATAIIAQYGSVENAYAHVDELKPPRASKNLKEYY
DLAQMSKTLATIEIHADIDYDLSGAKLNGISSLYTEEAYLLCKRLEFKNLLNRFAVETPK
NQAAEHFKLVEDRKEAEKVFAKLRGRNCGFYIVPGSKKKDSHEEEDGQMNLFAAGDMPGA
DSEPSGIVESAENDAVEYCLGAAISTGEEETFFIKAGENLPAKQILSMFTASEAASYATL
DLKPQLAALGLLERQVNGNIGLSNLFDGVLAAYLLNPLKNEYPYEDIAKDYMGQMIPSKA
DLLGKLTIEQAMKDAPEAFLNYVCYMAYVAQASKKTLETDLKEEGMDHLFTEIEMPLVFT
LADMENEGIIACREALTEYGDKLAVRIAELEKQIYEEAGEEFNINSPKQLGVILFEKLSM
PYGKKTKTGYSTAADVLDRLAPEYPIVSDILEYRQLTKLKSTYADGLVNYIAKDGRIHTS
FNQTITATGRLSSTEPNLQNIPMRIELGRLIRKAFVPKEGFEFMDADYSQIELRVLAHMS
GDEKLIEAYREAQDIHRITASQVFHIPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLS
ISKKEAAEYIERYFETYPKIKTFLDGLVAEAKEKGYVTTMFGRRRPVPELSSSNFMQRSF
GERVAMNSPIQGTAADIIKIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEEDAVRK
ILEEEMHGAADLAVTLEIDAHVGKNWYEAK
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atggagagaacaatgggcgaaaagctggtattgatagatggacacagtattttgaacagg
gcatttttcgggatcccggatctgacgaattcggaaggactgcacacgaatgcagtctat
ggatttttgaatattatgttcaagattttagaggaggagcagccggattatctgacggtt
gcatttgatgtgtcagaaccgactttccgccataaaatgttcgcagaatacaaaggcaca
agaaagccgatggcacaggaactgcgggaacaggttccgctcatgaaagaaatgttaaaa
gcgatgggagtcactacgatcgaaaaaggcggctatgaggcggatgatctgcttggaacc
attgcaaaacagagtgaacaaaaagggctgacagtttcagtggtatccggtgaccgtgac
ctcttacagcttgcaacggatcatattaagatccgtatcccgaaaacaaagcgcacaggc
acggagatcgaggattacaatgccgctgaggtaaaggaaaaatatcaggtgacgccaatc
gagtttatcgatgtcaaggcgctgatgggggatacggcagacaatattccgggagtgccg
ggaatcggtgaaaagacggcaacagcaatcattgcacagtatggaagtgttgaaaatgcc
tatgcacatgtggacgaattaaagccaccccgtgcaagcaaaaatttaaaagagtattat
gacctggcacagatgagtaagacgcttgcgacgatcgagatccatgcggacattgattat
gatctttccggtgcaaaacttaatggtatttccagcctgtacacggaggaggcatacctg
ctctgcaaacggttagagtttaaaaatcttttgaatcgttttgcggtggaaactccaaaa
aatcaggcggcagaacattttaaacttgtggaagaccgtaaggaggcagagaaagtattt
gcaaagcttcgtggcagaaactgtggtttttatattgttcccggaagcaaaaagaaagac
agccacgaggaagaggacgggcagatgaatctgtttgcggcaggagatatgccgggggca
gacagtgaaccgtccggcatcgtagaaagtgcagaaaatgatgcagtggagtactgcctt
ggagctgccatttcaactggagaggaagaaacctttttcataaaagcaggggaaaatctt
ccggcaaagcagattctttccatgtttaccgcaagtgaggctgcgtcctatgcgacactg
gatttaaaaccgcagcttgcggcgcttggcttactggagcgacaggtaaacggcaatatt
ggcctgtcgaatctttttgacggtgtgcttgcagcatatcttctgaatccgctgaaaaat
gagtatccatatgaggatattgcaaaagactatatgggacagatgataccgtcaaaggca
gatcttcttggaaaactgaccatagagcaggcaatgaaagatgcaccggaagcattttta
aattatgtatgctatatggcatatgtggcacaggcatcgaaaaagacgctggagacagac
ttaaaggaagagggcatggatcatctgtttacggaaatcgagatgccgctcgtatttact
cttgccgatatggaaaatgagggtatcattgcgtgcagggaggcgctcacggagtatggg
gacaaacttgcagtgcgtatcgctgaactggaaaagcagatctatgaggaagcgggagaa
gagtttaatatcaattctccaaaacagctcggagtgatcctatttgaaaaattgtccatg
ccgtatggaaagaaaacaaagaccggttattccacggcggcggatgtgttagaccgcctt
gcaccggaatatccgatcgtttctgatattttagagtatcgtcagcttaccaagttaaag
tccacttatgcggacggattggtaaactatatcgctaaagatggcaggatccacaccagt
tttaatcagacgatcacagctaccgggcgtttaagcagcacggagccaaacctgcagaat
atcccgatgaggatcgaacttggcagactgatccgcaaggcatttgtgccaaaagaggga
tttgagtttatggatgccgattattcccagattgagcttcgtgttttagcacatatgtcc
ggggatgaaaagctgatcgaggcataccgggaagcacaggatatccacaggatcacggcg
tcccaggtatttcacattccatttgatgaagtgacagacctgcagcgacgcaatgccaag
gcagtcaatttcgggattgtatatggaatcagttcgtttggactgagtcaggatttaagc
atcagcaaaaaagaagctgcagagtatattgaacggtactttgaaacttatccaaagatc
aagacgtttttagatgggcttgtggcagaggcaaaagaaaaaggctatgtaacgacgatg
tttggaagaagacgtccggtaccggaactttcaagcagcaattttatgcagcgttccttt
ggagaacgtgttgccatgaactcaccgattcagggaactgcggcagatatcatcaagatc
gcaatgatacgcgtgcatgacagactgttaaaagaaaatctaaagtcacgcctgatctta
accgtgcatgatgagcttttagtggagacggcgatcgaagaagaggatgcggttcgaaag
attctcgaggaagagatgcatggagcggcagatcttgcggttacacttgaaattgatgca
catgtcggcaaaaactggtatgaggcaaaataa
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