Roseburia intestinalis XB6B4: RO1_25160
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Entry
RO1_25160 CDS
T02597
Name
(GenBank) Transcriptional regulators
KO
K05499
LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
Organism
rix
Roseburia intestinalis XB6B4
Brite
KEGG Orthology (KO) [BR:
rix00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rix03000
]
RO1_25160
Transcription factors [BR:
rix03000
]
Prokaryotic type
Helix-turn-helix
LacI family
RO1_25160
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peripla_BP_3
Peripla_BP_1
LacI
Peripla_BP_4
HTH_10
HTH_23
Peripla_BP_6
HTH_3
HTH_38
Sigma70_r4_2
HTH_24
Fe_dep_repress
Sigma70_r4
HTH_Tnp_ISL3
HTH_11
HTH_7
DUF7624
MarR_2
HTH_36
Phage_terminase
K_channel_TID
Motif
Other DBs
NCBI-ProteinID:
CBL12981
UniProt:
D4L041
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Position
2541679..2542698
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AA seq
339 aa
AA seq
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MATIKDIATRLGVSVSTVSKGLNGASDISEELRQMVLDTAVEMGYATKKSKKKENRKLAV
FIENMEYETEDQFGYDIVLGFKQNAFRHNWDVTVIPVTPAFQLTEKYDTYMLKNGFCGAF
LVGFALHDEWMQQLSHTTMPTVLFDNYIEKNPNVCYVGTDNYEGIDAAVDHLYTLGHKKI
AFLNGSLHSMVSEQRQEAFYNSMKAHGLTVDEKLTAYGYYVADSAKYHVPTFLGAGATAI
ICGNDLIASGVIAECKLRGFRVPEDISVVGFDDLPLSASLEPPLTTVRQERNELGKCAYV
VLNSLVHHIPFCRTQIRARLIERESTARCQAAPEIKPLA
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaatcaaagatattgcaacaagactcggtgtttccgtcagtaccgtatcaaaa
ggtttaaatggcgcgagtgacatcagcgaagaattacgtcagatggtgcttgacactgca
gttgaaatgggatacgcaacaaaaaaatcaaagaaaaaagaaaaccgcaaactggcggtt
tttatcgaaaatatggaatatgaaacggaagatcagtttggctacgatatcgtactcggt
ttcaaacagaatgctttccgccataattgggatgttaccgttattccggtcacacctgct
tttcagcttacagaaaaatatgatacatacatgttaaagaacggtttctgcggtgccttt
ttagtcggattcgccctgcatgacgaatggatgcaacagctttcccacaccacaatgccg
actgttctctttgataactatatcgaaaaaaatccgaacgtctgctacgtcggcaccgat
aactatgagggcatcgacgcagccgtagatcatctttatacgctcggccacaaaaaaatt
gctttcttaaacggttccctgcactccatggtatccgagcagcgccaggaagcattttat
aacagcatgaaagctcacggactgactgttgatgagaagctgaccgcctacggctattat
gtggcagacagcgcaaagtatcacgtcccgacgtttctcggcgcaggtgcgactgcgatc
atctgcggcaacgatctgattgcttccggtgtgatcgctgagtgtaagctgcgcggtttc
cgtgttccggaggatatcagcgttgtcggttttgatgacctgccgctctctgcctcctta
gagccgccgcttaccacggttcgtcaggagcgcaatgagcttggaaaatgcgcttacgtc
gttttgaattcgctggtgcaccacatcccgttctgccggacgcagatccgggcaaggctc
atcgaaagagagtcgaccgcacgctgtcaggcggcgccggagatcaaaccgctggcttaa
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