Roseburia intestinalis XB6B4: RO1_25690
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Entry
RO1_25690 CDS
T02597
Name
(GenBank) DNA polymerase III catalytic subunit, DnaE type
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rix
Roseburia intestinalis XB6B4
Pathway
rix03030
DNA replication
rix03430
Mismatch repair
rix03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RO1_25690
03430 Mismatch repair
RO1_25690
03440 Homologous recombination
RO1_25690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rix03032
]
RO1_25690
03400 DNA repair and recombination proteins [BR:
rix03400
]
RO1_25690
Enzymes [BR:
rix01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RO1_25690
DNA replication proteins [BR:
rix03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RO1_25690
DNA repair and recombination proteins [BR:
rix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RO1_25690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
EAP30
CmlS_C
Secretin
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
CBL13025
UniProt:
D4L085
LinkDB
All DBs
Position
2589746..2593216
Genome browser
AA seq
1156 aa
AA seq
DB search
MSFTHLHVHTEYSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYKAARAAGIK
PILGCEVYVAPGSRFDRELSHGDDRYYHLVLLAENNKGYQNLMKIVSKGFVEGYYYKPRV
DMEVLETYHEGIIALSACLAGEVQRYLVRGLYEEAKETAYKYEKCFGKGNFFLELQDHGI
PEQKTVNAGLMRMSQETGIELVATNDVHYTYAEDAEPHDILLCLQTGKKLSDENRMRYEG
GQYFVKSEEEMRALFPYAAQAIDNTQKIADRCNVEIEFGVTKLPHFDVPEGYDSWTYLNK
LCHEGLVRRYPDKHEELLPKLDYELSVIQKMGYVDYFLIVWDFINYARTHGIPVGPGRGS
AAGSLVSYTTGITNIDPIRYNLLFERFLNPERVTMPDIDIDFCYERRSEVIDYVIEKYGK
DCVTQIVTFGTLAARGVIRDVGRVMDLPYNFCDTIAKNIPNELNITIDKALIMNPELRSM
YESDETVKRLIDMAKRLEGLPRHTSMHAAGVVISQKAMDEYVPLSRSSDGTITTQFVMTT
IEELGLLKMDFLGLRTLTVISDAVKLVEKNHGIKIDVDNIDYNDKKVLDSIGTGRCDGVF
QLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPKYIKGKNEPESVTYVCKELEPI
LEPTYGCIVYQEQVMQIVQNLAGYTMGQADNIRRAMSKKKQYVIDAERQNFVYGNEEQGI
KGCIANGISEQAANQIYDSMVDFAKYAFNKSHAAAYAVVAYQTAYLKYYYPVEFMAALMT
SVIDNTRKVAEYIYSCRQMGIKVLSPDINEGEGRFLATKDGIRYGMYAIKSIGRQVIDII
LAEREANGKYTTLSDFLSRVAGREVNKRAVENLIKAGACDGLDGNRQQMLLVYNTLIDNL
NQEKKNSLAGQMSLFDLVSEEEKKAYEVRFPNVEEYTKEIKLGFEKEVLGIYLSGHPLEE
YEEKWRKNISAVTADFMLDEETNAVKIKDNQSVVIGGIITEKTIKYTKQNKAMAFITVED
LFGTVEVIIFPRDYEKYSRYLNEDEKVFVAGHANVEEDKNGKLICEKIYSFDDTKRELWL
QFATKESYEEKEKELYSRLYGSDGNDEIVIYIASLRAMKRLGQNYNVHINPELVGNLTEF
LGEKNVKIVEKSIEKK
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttacgcatctgcacgtccatacagagtacagccttttggacggttcaaataag
ataaaagaatatgtttcaagagtcaaagaactcgggatgaacagcgccgccatcacagat
catggtgtgatgtacggcgtgattgatttttataaggcagcaagggcagccggaatcaag
ccgatcttaggctgtgaggtatatgtagcacctggatcgagatttgacagggagctttcc
catggagatgaccgttattatcatctggtacttttagcagagaataacaaaggttaccag
aacctgatgaagattgtttccaaaggatttgtggaaggatattactacaaaccacgtgtg
gatatggaagttttagaaacttatcatgagggaatcattgccttaagtgcctgtcttgcc
ggtgaggtgcagcgctatctggtacgtggactttatgaggaagcaaaagagactgcatac
aaatatgaaaaatgttttggaaaaggcaacttctttttagaactgcaggatcatggaata
ccggaacaaaagacagtcaatgcaggactgatgcggatgagccaggagacaggtattgaa
ctggtggcaacaaacgacgtacattacacttacgctgaggatgccgagccgcatgatatt
ttactctgtctgcagaccggaaaaaaactgtccgacgaaaaccgcatgcgttatgagggc
gggcagtattttgtgaaatctgaggaggagatgcgcgcgctgtttccgtatgcggcacag
gcgattgacaacacacagaagatcgcggaccgctgcaatgtggagattgaatttggagtg
accaagctgccgcattttgacgtgccggaggggtatgattcgtggacttacctgaacaaa
ctctgtcatgaggggctggtaagacgttacccggacaagcatgaggagcttttgccgaag
cttgactatgagctttctgtcatccagaagatggggtacgtcgattatttcctgatcgta
tgggattttatcaactatgcgagaacgcacggtattccggttggcccgggaaggggaagt
gctgcgggaagtcttgtttcctatacaacaggaatcaccaatattgatccgatccgttat
aacctgctgtttgagcggttcttaaatccggaacgtgtgaccatgccggatatcgatatt
gacttctgctatgagagacgaagtgaagtcattgattacgttattgaaaaatacggaaaa
gactgtgtaacgcagatcgttaccttcggtacgttagcggcgcgcggtgtcatccgtgat
gtcggacgtgtcatggatctgccgtataatttctgtgatacgattgcaaaaaatattcca
aacgagctcaatatcacgatcgacaaagcactcataatgaacccggaactgcgttccatg
tatgagtcggatgagacggtaaaaagactgatcgacatggcgaaaagactagaaggtctg
ccgcgccatacatccatgcatgccgccggagtcgtaatctcccagaaggcgatggacgaa
tatgtgccgttgtcgcgaagttctgacggtacgatcacaacacagtttgtcatgaccacg
atcgaggaactcggactgttaaaaatggatttccttggactccgtactttaactgtcatc
agtgatgcggttaaacttgtggaaaaaaatcatggaataaaaattgatgtggataacatt
gattataacgataaaaaagtattagattcgatcggaaccggaagatgcgacggtgtattc
cagttagaaagtgcgggcatgaaaaacttcatgaaggagttaaaaccgcagagtttagag
gatgtcatcgccggcatttccctttaccgtccgggaccgatggattttatacccaaatat
atcaaagggaaaaatgaaccggagagcgtgacctatgtctgcaaggaattagagccgatc
ttagagccgacgtatggctgcattgtctatcaggagcaggttatgcagatcgtgcagaac
cttgccggttatacaatgggacaggcagataacatccgccgtgccatgagtaaaaagaag
cagtatgtcattgacgcggaacgtcagaattttgtttatggaaatgaagaacagggcatc
aagggctgtatcgcaaatgggatcagtgagcaggcagcaaaccagatctacgattccatg
gttgattttgccaaatatgcatttaacaaatcccacgcggcagcttatgcggtggttgct
tatcagacggcgtatttaaaatattattatccggttgaatttatggcggcgctcatgacg
tctgtgatcgacaatacaagaaaagttgcagagtacatttattcctgccgccagatggga
attaaggtactttctccggacatcaatgagggagaaggacgctttttggcaacaaaagat
gggatccgctacggcatgtacgcaatcaagagcatcggcagacaggttattgatatcatt
ttagctgaaagagaagcgaacggaaaatataccacgctctctgatttcttaagccgtgtg
gcggggcgtgaggtcaataagcgcgcagtcgaaaacctgatcaaagcaggagcctgtgac
gggttagacggcaacaggcagcagatgcttttagtatataatacgctgattgataacctg
aatcaggaaaagaaaaattcgcttgccgggcagatgtctttgtttgaccttgtctcagag
gaagaaaaaaaggcgtatgaagtccgtttcccgaatgtggaggagtacaccaaggagatc
aaacttggttttgagaaggaagttcttggcatttatttaagcggacatccgttggaggaa
tatgaggaaaaatggcgcaaaaatatcagcgccgtgacagcagattttatgctggatgaa
gaaacgaatgccgtaaagatcaaagataaccagagtgttgtcattgggggcatcatcact
gaaaagaccatcaaatacaccaagcagaacaaagcgatggcattcatcacggtcgaggat
ctgtttggaacggtggaagttattatttttccgcgcgattacgagaaatacagccgttat
ttgaacgaggatgaaaaagtctttgtcgccggacatgccaatgtcgaggaagataaaaac
ggaaaactgatctgtgaaaaaatctattcctttgacgacaccaaacgggagctgtggctt
cagtttgcgacaaaagaatcatatgaagaaaaggaaaaagaactgtattcccggctctat
ggttcggacggaaatgatgagattgtgatctatattgcctcgctgcgtgccatgaaaaga
ttaggccaaaattacaatgttcatatcaatccggagcttgttggtaacttgacggaattt
ttgggcgaaaaaaatgtaaaaattgttgaaaagagcattgaaaagaaataa
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