Roseburia intestinalis XB6B4: RO1_34480
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Entry
RO1_34480 CDS
T02597
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
rix
Roseburia intestinalis XB6B4
Pathway
rix03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RO1_34480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rix03400
]
RO1_34480
DNA repair and recombination proteins [BR:
rix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RO1_34480
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RO1_34480
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
SWI2_SNF2
Kinesin
SPESP1
AAA_22
Microtub_bd
UB2H
AAA_5
Motif
Other DBs
NCBI-ProteinID:
CBL13732
UniProt:
D4L292
LinkDB
All DBs
Position
3411567..3413561
Genome browser
AA seq
664 aa
AA seq
DB search
MRNIMDHFKLHSKYKPTGDQPHAIEELVKGFEEGNQFQTLLGVTGSGKTFTMANVIQALN
KPTLIISHNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPQTDTYIAKDSAINE
EIDKLRLSATAALVERKDVIVVASVSCIYGLGSPEDYLGMMVSLRPGMEKDRDDVIRALV
DIQYTRNDMDFHRGTFRVRGDTLEIFPANYGDTAVRVEFFGDEIDRITEVDVLTGEIKCE
LEHFAVFPASHYVVPQEKILKACDAIEQELDERIRYFKGEDKLLEAQRISERTNFDIEML
KETGFCSGIENYSRHLAGLPAGATPHTLMDYFKDDYLIIVDESHITIPQIRGMYAGDQSR
KSTLVDYGFRLPSAKDNRPLNFEEFESKIDQMLFVSATPNVYEDEHELLRTEQIIRPTGL
LDPEVVVRPVEGQIDDLIGEVNKEIKDHHKVLITTLTKKMAEDLTDYMREIGIRVKYLHS
DIDTLERAEIIRDLRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQT
IGRAARNSEGHVIMYADKITDSMRVAMEETKRRREIQQAYNEEHGITPTTIQKSVRELIS
VSKKVAKEEMNFKKDPESMNRDELTKLIADIQKKMQKAAADLNFEAAAEYRDKMVELKGM
LRDM
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgaggaatatcatggatcatttcaaattacattcaaaatacaaaccaaccggggatcag
cctcatgcgatcgaggagctggtaaaaggatttgaggagggcaaccagtttcagacgctg
cttggagtgactggttccggtaagacttttacaatggcaaatgtgatccaggcattgaat
aagccgacactgatcatatcgcataataaaacgctggcagcgcagttatacggggagatg
aaagaatttttcccggagaatgcggtcgaatattttgtgtcatactatgattattaccag
cccgaagcatatgtgccgcagacggatacctatatcgcaaaggactccgcaatcaatgag
gagatcgataaactgcgtctttcagcgacggcggcgctggtggagcgcaaggatgtgatc
gtggtggcatcggtttcctgtatttatggtttaggcagtccggaagattatcttggcatg
atggtttccctaagacccgggatggagaaggacagagatgacgtgatccgtgcgctggtc
gatattcagtatacgagaaatgatatggattttcaccgaggtacgttccgtgtgcgggga
gatacgttagagattttcccggcaaactacggagatacggcggtccgtgtggaatttttc
ggggatgaaatcgaccgtatcacggaggtggatgtgctgacaggggagatcaaatgcgag
ctggagcactttgcggtgttcccggcatcccattatgttgtgccgcaggagaaaatctta
aaggcatgcgatgccatcgaacaggaactggatgagcgcatccggtattttaagggcgag
gacaagctgcttgaggcgcagcgcatttccgagcggacgaattttgatatcgagatgtta
aaagaaacaggtttctgcagtggtattgaaaattattcgagacatcttgcaggacttccg
gcgggggcaacgccgcatacgctgatggattattttaaggatgattatctgatcatcgtg
gatgagtcccatatcacgattccacagatccgcggcatgtatgcgggagaccagtcgaga
aagtcaacgctggtggactacggattccgtctgccgtcggcgaaagacaaccggccgctt
aattttgaggaatttgagagcaagatcgatcagatgctgttcgtatcggcaacaccgaat
gtatatgaggacgaacacgagctgcttaggacagaacagattatccgtccgaccggactg
ctcgatccggaggtcgtggtgcgtccggtggagggacagatcgatgatctgatcggtgag
gtcaataaggaaatcaaagaccatcataaggtgctgattacgacactgacgaagaagatg
gcggaggatctgacggattatatgcgtgagatcggtatccgcgtgaaatatcttcattcg
gatatcgatacgttagagcgtgcggagatcataagagatctgcggctggatgtatttgat
gtgcttgtcggcatcaacctgctccgggagggactggatattccggagatcacgctggtg
gcaattttagatgcagataaagagggattcctgcggtcggagacatcactgatacagacg
atcgggcgtgctgcgcgtaacagtgagggacacgttatcatgtatgcggacaagatcaca
gactccatgcgtgttgcgatggaggagacgaagcgccgccgtgagatacagcaggcatac
aatgaggaacacggcattacaccgacaacgatccagaaatctgtgcgggaactgatcagc
gtgtcaaagaaggtcgcaaaggaagaaatgaacttcaaaaaagacccggaatccatgaac
cgggacgaactcacaaagctgatcgcagacatccagaagaagatgcagaaagcggcagca
gacttaaacttcgaggctgctgcagagtaccgcgacaagatggtggagttaaagggcatg
ctgcgtgatatgtga
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