Roseburia intestinalis XB6B4: RO1_42990
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Entry
RO1_42990 CDS
T02597
Name
(GenBank) Type IV secretory pathway, VirD4 components
Organism
rix
Roseburia intestinalis XB6B4
Pathway
rix03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
rix00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
RO1_42990
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Gene cluster
GFIT
Motif
Pfam:
T4SS-DNA_transf
TraG-D_C
TrwB_AAD_bind
AAA_22
DEAD
Motif
Other DBs
NCBI-ProteinID:
CBL14455
UniProt:
D4L4B5
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Position
4252827..4254620
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AA seq
597 aa
AA seq
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MRNDNDQKTGLILSICGIVPVVWLSLLTAPYVSGGIVEIVSGLSVAVNNPFSITVCEDSV
KTVLIFLLAYAMGIGIYFSTRRNYRRREEHGSAKWGNTGTLNKKYRDKNPFENKLLTQNV
RIGLDGKKHRRNLNILVCGGSGAGKTRFFCKPNAMQCNTSFVVLDPKGEIVRDIGGLLEK
KGYEVRVLDLINMHRSHCYNPFVYLRNDNDVQRLVTNLFKATTPKGSQSQDPFWDTAASM
LLLALVFYLKYEAPPEEQNFPMVMELLRAGEVREDDDSYISPLDELFDRLEMVNPEHIAL
KYYRDYHSGSAKTLKSIQITLAARLEKFNLESLAGLTATDELDLPSLGEKKVALFALIPD
NDTSFNFLVSILYTQLFQQLFYLADHKYGGSLPVHCHFIMDEFANVSLPDDFDKILSVMR
SRGVSVSIILQNLAQLKALFEKQWESIVGNCDEFLYLGGNEQSTHKYVSELLGKETIDTN
TYGKSSGRSGNYSTNYQMSGRELMTPDEVRMLDNRYALLFVRGERPVMDFKYDILKHPNV
KLTADGGQPPYVHGEPTQAVATLVFDSEIPDNAVSVMPVSTSYELLSDEDLEEIFNI
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgaggaacgataacgaccaaaagacgggcttaatcctttctatctgcggcatcgttcct
gttgtatggctttcactgctgacagcaccctatgtcagcggcggcatcgtggagatagtc
agcggcttatccgtagcagtaaataacccgttttccataacggtgtgtgaggacagcgta
aagactgtccttatttttttgcttgcctacgctatgggcatcggcatctatttctccaca
cgcaggaactaccgcaggcgggaggaacacggctcggcaaaatggggcaatacaggtact
ctcaacaagaagtaccgagataaaaacccgttcgagaacaaactgctcacgcaaaatgtg
cgtatcggcttggacggaaagaagcaccgccgaaacttgaatattttggtctgcggcggt
tctggtgcaggtaagacaaggtttttttgcaagcccaacgctatgcaatgcaacacctct
ttcgtggtgcttgacccaaagggcgaaatcgtccgtgacattggcggtctgctcgaaaag
aaaggttatgaggtgcgtgtccttgaccttatcaatatgcaccgcagccattgttacaac
ccctttgtgtatcttcggaacgacaacgatgtgcaaaggcttgtgaccaatctctttaag
gcgaccaccccgaaaggaagccagtcgcaagacccgttctgggatacggcggcgagtatg
ctgcttctggcattggtattctatctcaaatatgaagcaccgccagaggaacaaaacttc
ccgatggttatggagcttttacgggcaggcgaagtgcgtgaggacgatgacagctatata
agccctcttgacgaactctttgaccgtctggagatggtaaacccagagcatatcgccctc
aagtattacagggattatcattcaggctcggctaagaccttaaagagtatccagataacc
cttgccgcaaggcttgaaaaattcaatctggagagccttgcagggcttactgccaccgat
gagcttgacctgccaagtctgggggaaaagaaagtcgctttattcgccctgataccagac
aacgatacgagctttaactttcttgtgtcgattttatacacgcagctctttcagcaatta
ttttatctggcagaccacaagtacggcggcagcctgcccgtgcattgccattttattatg
gacgagtttgccaatgtttccctgccagacgattttgacaagatactgtcggttatgcgt
tcccgtggcgtgtcggtcagtatcatcctgcaaaatctggcacagctcaaagccctgttt
gaaaagcaatgggaaagcatcgtgggcaactgcgatgagtttttgtatctgggcggcaac
gagcaaagcacccataagtatgtgtccgagcttttaggtaaggaaaccattgataccaac
acctacgggaaaagctctggacgaagtgggaactattcgaccaactaccagatgtcaggg
cgtgagctgatgaccccagatgaagtgcgtatgcttgataaccgctacgcacttcttttt
gtgcgtggcgagcgacccgttatggattttaagtatgacatcttaaagcaccccaatgta
aaactgactgctgacggaggtcagccgccctatgttcacggcgagccgacacaggcggtt
gcgacccttgtgtttgacagcgaaatacctgataacgccgtaagcgttatgcctgtcagc
acttcctatgaacttctgtccgatgaggacttagaagaaatattcaacatctaa
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