Rickettsia sp. 2024-CO-Wats: ACE5D9_05075
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Entry
ACE5D9_05075 CDS
T11691
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
riz Rickettsia sp. 2024-CO-Wats
Brite
KEGG Orthology (KO) [BR:
riz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACE5D9_05075 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
riz03021
]
ACE5D9_05075 (rpoD)
Transcription machinery [BR:
riz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACE5D9_05075 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_ner
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Nrap_D6
Motif
Other DBs
NCBI-ProteinID:
XIA56797
LinkDB
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Position
complement(192267..194171)
Genome browser
AA seq
634 aa
AA seq
DB search
MSNSNINNDLDKIDSLLKKAKSKKIPVTYDDINNALPLNKNPSIRQLEEAILKFSDAGVD
ILESNEDDEIKLDIGMDEEFKLSTNVDNESEDEVEEENIGTTDDPVRLYLKDMGGVDLLT
RENEVEIAKRIEEGHKTMTASLCRSPIAMRCFIVWYEDLVNEKMLLRDLIDLEANMLHDE
TPENDEEHSSETEGEEHEDNHLSMSRVETQILPNIIERMKKISFICEELLIEAKKCYEKS
FDPKALQNSKKYNNLELLINEVSEIHFNSKRTEEILGKMYGINRDLINKETAFLKLAEKY
GVTRQNFLDEYIGSVINAAWKEKMLKNKKVAWKELITKESDYIDQMIAELSIIESKTGLL
INDFKKLVNTIQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMK
AVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKILRTSRQMLNEL
GYEPTATEIANRLSMPLDKVRKVMKIAKEPISLENPVGDDSDGGQLGDFIEDKNAVAPID
AAIQSNLREVTTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESK
ALRKLQHPIRSKKLNSFRSGGKRGDGNPSDLLEA
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatagcaatataaacaatgatctagataaaatagatagtttacttaaaaaagct
aaatctaaaaagataccggtcacttatgatgatataaacaacgctcttcctcttaataaa
aatccttcaataagacaattagaggaagctatattaaaattttccgatgcgggggtagat
attttagaatctaatgaagatgatgaaattaagcttgatatcggaatggatgaagaattt
aagctatctaccaatgttgataatgaatctgaggatgaggtagaagaagaaaatataggt
actaccgatgatcctgtaagattatatcttaaggatatggggggagtcgatcttttaact
cgtgaaaatgaagtagaaatagcaaaaaggattgaggaaggacataaaacaatgactgct
tccttatgtagaagccctattgctatgcgttgttttatagtatggtatgaagatttagtt
aatgaaaaaatgttactacgtgatctgatagatttagaagctaacatgttacatgacgaa
acacccgaaaatgatgaagaacatagtagtgagaccgaaggagaagagcatgaggataat
cacttatctatgtctagagtagaaacgcagatattacctaatattatagagcgtatgaaa
aagatttcttttatctgcgaagagctactcattgaagctaaaaaatgttatgagaaatct
tttgatccgaaggctttacaaaatagcaaaaaatataataatttggaattattaataaat
gaagtttcggaaatacattttaattctaaaagaacagaagaaattttaggtaagatgtat
ggaataaatcgtgatttaataaataaagaaacagcttttttaaaacttgctgaaaaatat
ggagtaactcgccaaaatttccttgatgaatatataggatcggttatcaatgcagcatgg
aaagaaaaaatgctgaaaaataaaaaagtcgcttggaaagagttaataactaaagaatcg
gattatatagatcaaatgattgctgaattatcgattatagaatctaaaaccggtctttta
attaatgattttaaaaaactagtgaatactatacaaaaaagtgagagacaaacgctacaa
gcaaaaaaagatatgatagaagcgaatttacgtttagttatatctatcgctaaaaaatac
gctaatagaggattgcagtttttagatttaattcaagaaggtaatataggacttatgaaa
gcggtggataaatttgaatatcgccgtggttataaattctctacctatgctacgtggtgg
attagacaagctataacaagagctattgccgatcaagcaaggactatacgtattcctgtg
catatgattgaaacaattaataagatactacgtacttcaagacaaatgcttaatgaactc
ggatacgaaccaacagcaacggaaatcgctaaccgtctttcaatgccgcttgataaagta
cgtaaagtcatgaaaatagctaaagaacctataagtcttgaaaatcccgtaggtgatgat
agtgacggcggtcaattaggcgattttatcgaagataagaatgcagtagcaccgattgat
gcggcaattcagtcaaatttacgagaagttaccactagagtacttgcaacccttacgcct
cgtgaagaaagagtgcttagaatgcgtttcggtataggtatgaatactgaccatacatta
gaagaagtagggcagcaatttaaagtaactagagaacgtataagacaaatcgagtcaaaa
gctttaagaaagttacaacatcctattagatccaaaaaacttaatagctttagaagcgga
ggaaagcgtggtgacggtaatccatcggatttactagaagcatga
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