Rickettsia japonica: RJP_0477
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Entry
RJP_0477 CDS
T01637
Name
(GenBank) putative hydrolase of the metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rja
Rickettsia japonica
Pathway
rja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RJP_0477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rja03019
]
RJP_0477
Messenger RNA biogenesis [BR:
rja03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RJP_0477
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
DUF4587
DUF826
Motif
Other DBs
NCBI-ProteinID:
BAK96691
UniProt:
G4KN33
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Position
605946..607628
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AA seq
560 aa
AA seq
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MSSFNIKNHKNDLLFVPLGGSNEIGMNLNLYHYQGKWLMVDCGSGFADDYLPGVDMIIAD
SSFIEKYKKDIVGLILTHAHEDHLGGVQYLWNSLKGPIYTTTFTANFLKIRLNEYDFAKN
IKIHEVKPGSKINLDPFSLEMVPLTHSAPEMQAIMIRTDAGNILHTGDWKFDNDPILGQK
ANEELLKSYGDEGVLALVCDSTNVFNKGSSGSEGDVRKSLVDIIAGCPQMVVVSTFASNL
ARLDTIIHAAGLAGRKVVLTGRSLHRMMLAAQESGYLKDIAPLISERDVSRFRREELLVI
ATGCQGEPMAATAKLASNSHPSIKLVPKDTMIFSSKIIPGNEKKIFRLFNIFVKAGVEVI
TERDHFVHVSGHPSIDELQKMYSLIRPNICIPVHGEPVHIHEHVKLAKKNGIKQSVEVEN
GSVVLLEPNNAKVISKVENGYLAVDGNYLLSVESPIFKARRRMRESGIVVASVVINKKGL
LAANPMLSMPGLLDPKEDMALVNLIKNDIKELVTIQNKQAKKALSDEQVIEAIKGTIRKT
LKQEINKSPVIIVNLEKAVE
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcattcaacatcaaaaatcataaaaatgatctgctatttgtaccgctaggggga
tctaatgaaataggtatgaatcttaatctttaccattatcaaggtaaatggttaatggtt
gattgtggtagcggctttgccgatgattatttacccggtgttgatatgataattgctgat
agcagctttatcgagaaatataaaaaagatatagtaggtctgattttaactcatgctcac
gaggatcatttaggtggagtccaatatttatggaatagccttaagggtcctatttatact
actacttttacagcaaattttttaaaaattcgtttaaatgaatatgattttgctaaaaat
ataaaaattcatgaagtaaaacccggtagtaaaataaatctagatcctttttccttagag
atggtgccactgactcactcggctcctgaaatgcaagcaattatgatccgtacggatgca
ggtaatattttacatacgggggattggaaatttgataacgatccgatacttggacaaaaa
gccaatgaggagcttttaaaatcttacggagatgaaggggttcttgcacttgtttgtgat
tcaactaacgtatttaataaaggaagctcaggttctgagggggatgttagaaaaagttta
gtagatattatagccggttgtcctcaaatggtagtagtttcaacctttgcctctaattta
gcacggcttgatacaataattcatgctgcagggcttgcgggtagaaaagtagtcttaacc
ggtagaagtttgcaccgtatgatgcttgctgcgcaggaaagcggctatttgaaagatatt
gctcctctaattagtgaacgtgatgttagcagatttagaagagaagaattattagtaatt
gctaccggttgtcaaggtgagcctatggctgccaccgcaaaactggctagtaattctcac
ccgtctataaagcttgttcctaaggatacaatgattttttcttcaaaaattattccgggt
aatgaaaagaaaatattcaggctatttaatatatttgttaaagccggtgtagaagttatt
accgagcgagaccattttgtacatgtttcaggacatccatcgattgacgagctacaaaaa
atgtattctctaattagaccgaatatttgtatacctgttcacggcgagcctgtacatatt
catgaacatgttaagcttgctaagaaaaacggcataaaacagtcagtagaggttgaaaac
ggtagtgtagtactgcttgaacctaataatgcaaaagtaatttcaaaggttgaaaacggt
tatttagctgttgacggtaattatttgctgtccgttgaatctccgattttcaaagctaga
agacgtatgcgtgaatcgggtattgtggtagcatcagtagtcattaataaaaaaggactg
cttgctgcaaacccaatgctgtctatgcccgggctgcttgatccgaaagaggatatggca
ttagtgaacctcattaaaaacgacattaaagaacttgttaccattcaaaataaacaggca
aaaaaagcattgtcggatgaacaagtaatcgaggcaataaaaggaacaatccgtaaaacc
ttaaaacaagaaattaataagtcacccgttataatagtaaatcttgagaaagctgtggag
tag
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