Rickettsia japonica: RJP_0486
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Entry
RJP_0486 CDS
T01637
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rja
Rickettsia japonica
Pathway
rja03420
Nucleotide excision repair
rja03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RJP_0486 (uvrD)
03430 Mismatch repair
RJP_0486 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rja03400
]
RJP_0486 (uvrD)
Enzymes [BR:
rja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RJP_0486 (uvrD)
DNA repair and recombination proteins [BR:
rja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RJP_0486 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
RJP_0486 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
AAA_11
AAA_12
DUF87
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
BAK96700
UniProt:
G4KN42
LinkDB
All DBs
Position
616559..618520
Genome browser
AA seq
653 aa
AA seq
DB search
MQNQDFIHTLNPEQQQAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNILAV
TFTNKAAKEMAERVNSLINCYGLNIGTFHSMAARILRDQIENLNLGLNNRFTIISHDDQL
KLVKDIVKLKDIDTKKYAPKLIHIIISRWKDQGLLPTKLSVSDTNLPLQRVAKLVYEEYQ
KNLLISNVLDFGDLLLYNNELFIKNPEILRYYQEKYRYILIDEYQDTNVVQYLWARMLAS
LYKNICCVGDDDQSIYGWRGAEVGNILRFEKDFAGATIIKLEQNYRSTLPILAAASNVIN
NNKNRHGKTLWTDRENGEKIKIISCWSDKEEARYIAGEIDKLVRENRYNAGNIAILVRAG
FQTRSFEEAFINSAMPYKIIGGLRFYERMEIRDVLAYIRISLNQNDNLALERIINVPKRA
IGAASLNKIRVYALERNISNFAAIKEMLEIGEIKAKSYETLKDLITKIDNWYERFSIDAP
INVVKAILDDSGYLEMLQEEKTEEAFGRIENINEMLRAITEFNDVHDFIEHSSLVMENEV
LETNYGGSVTIMTLHAAKGLEFDVVFLPGWEEGVFPSQRSLDEDGEKGLEEERRIAYVGI
TRAKKDLYITHAESRKIFYEIVRSYPSRFITEIPDEITIRTSSMKKYNSFYKF
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatcaagatttcatacatacattaaatccagagcagcaacaagcagttcttcac
actgaaggaccgcttttattgcttgcaggtgcagggacaggtaaaacaaaggtacttacc
tcaagaatagctaatattattcaccaaaatttagcctcacctcaaaatattctagctgtt
acttttactaataaagctgctaaagaaatggctgaaagagttaatagtctaattaattgc
tatggtcttaatataggcactttccactcaatggcagctaggatattacgtgaccagatt
gagaatttaaatcttggtttaaataatagatttactattattagtcatgatgatcaatta
aaactagtgaaagatatagtaaagctaaaagatattgatactaaaaaatatgctcctaaa
ttaatacatatcataatttctagatggaaagatcaaggattattaccaactaaactatca
gtatcagatactaatttaccgctacagagggttgcaaaacttgtatacgaagaatatcag
aaaaatttacttatttctaatgttttagattttggagatttgctactttataataatgag
ctttttattaaaaaccctgaaatactaagatattaccaagaaaaatatcgatatatttta
atcgatgaatatcaagacactaacgttgtccagtatttatgggcaagaatgctcgcaagt
ttatataaaaatatttgctgtgtaggggatgatgatcaatctatttatggttggcgagga
gcagaagtcgggaatatattacgttttgaaaaagattttgcaggtgcaacaattattaaa
ttagagcagaattatagatcaactttgccaatacttgctgctgcttccaatgttatcaat
aataataaaaaccgtcacggtaaaacgttatggacggatagggaaaacggtgaaaagata
aaaattatctcttgttggagtgataaagaagaagcaagatatatagccggtgaaatagat
aagttagtgcgagaaaaccggtataatgccggtaatattgcaatattagtacgagccgga
tttcaaacaagaagttttgaggaagcgtttataaatagtgctatgccttataaaattata
ggcggtttgcggttttatgaacgtatggaaataagagacgtgcttgcttatatccgtata
tctttgaatcaaaatgacaatctagcacttgagcgtattataaatgtgccgaaaagggca
ataggtgcagctagcttaaataaaattagagtctatgcacttgagcgaaatatttctaat
ttcgcagccattaaagaaatgctagaaataggtgagattaaagcaaaatcatatgaaact
ctaaaagatttgattactaaaatcgataattggtacgaaagatttagtatagatgctcca
ataaacgtagttaaagcaatacttgatgattccggttatcttgaaatgcttcaagaagaa
aaaaccgaagaagcattcggtagaatcgaaaatattaacgaaatgcttagagctattact
gaatttaacgatgttcatgattttatcgaacattcaagcttagttatggaaaatgaagtg
cttgaaaccaattacggtggctctgttactataatgaccctgcacgcagctaaagggctt
gagtttgacgtggtatttttaccgggctgggaagagggggtatttccgtctcaaagatct
ctagacgaagacggcgaaaaaggcttagaagaagaacgtcgcattgcttatgtcggcatt
acgagagccaaaaaagacctctacattactcatgctgaaagcagaaaaatattttatgaa
atagtccgttcttacccttcaaggttcataactgaaatccctgatgaaattacgatcagg
acctcttctatgaaaaaatacaattctttttataagttttaa
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