Rickettsia japonica: RJP_0891
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Entry
RJP_0891 CDS
T01637
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rja
Rickettsia japonica
Pathway
rja03030
DNA replication
rja03430
Mismatch repair
rja03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RJP_0891 (dnaE)
03430 Mismatch repair
RJP_0891 (dnaE)
03440 Homologous recombination
RJP_0891 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rja03032
]
RJP_0891 (dnaE)
03400 DNA repair and recombination proteins [BR:
rja03400
]
RJP_0891 (dnaE)
Enzymes [BR:
rja01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RJP_0891 (dnaE)
DNA replication proteins [BR:
rja03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RJP_0891 (dnaE)
DNA repair and recombination proteins [BR:
rja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RJP_0891 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
BAK97084
UniProt:
G4KLJ2
LinkDB
All DBs
Position
complement(1122296..1125841)
Genome browser
AA seq
1181 aa
AA seq
DB search
MRPEFIHLRTQSSYSFLESALTIEKVVELASSNKMSAICLADKGNLFGSLEFALCAVKKG
LQPIHGVILNIKYDIDIFAQILLIAKDETGYKNLLKLSSLTFIKNDRKICDHIDFEDLIE
YQEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMRHEIPEEQFIED
SYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKTVSENCYFRSPH
EMIELFSDLPSAIQNTMNLRERCYFAAHANPPMLPNFATKDISETDLIKKDAKEGLLARL
ATKFKSENISLENQEELKTEYFARLNYELDIICNMNFAGYFLIVSDFIKWSKKEGILVGP
GRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDIDFCQERREEVINYVRS
KYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVPFSAVNPVSLEQAMREV
PELANAAKGNGLYNLDGEAELIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLVDIVPVY
KDANSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLKEQGIEVDFNNMTFDDN
KTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALYRPGPMENIPTYIACKH
KLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAADLLRRAMGKKIKKEME
EQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYGVISYQTAYLKANYPAE
FLVACLNLELNHHDKINLFLQEAKDNGIKIIAPNINISEGYFSVKFSDTVIPHSVKPVIP
QLDRGIQEISKDTVVKPRYDIAGAIIFALGAIKGVTPNFGKLVTDERKARGAFKSITDFI
ERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYSTAYHEEQESNQFSLIKV
SSLSPTILVSSDYADKNTLAFYEFEAMGLFISNHPLTEYQEIFSRLNILNTADLHNNLPD
GTNRVNLAGVIQKKDSRMSARGRFVTLVLSDPENIFELSIFSEEVLKDYVHLLDVKSLVV
VNCDIVKDEGGIKLTAKSFSSIEDAINNKQFELQFYPQNHEELRQIVTLLAARINNEDQS
NAKATIYLQSADVKNFIAKITLPEKFLLQGQDFEILKGYSK
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgcgacctgaatttattcatttaagaactcaaagctcttattcttttctagaaagtgca
ttaacgattgagaaggtagtagaacttgcttcatcgaataaaatgtctgctatttgtttg
gcagataagggaaatttattcggctcattagagtttgcattatgtgcagtaaaaaaagga
ctgcagccgatacacggagttattctaaatataaaatacgatatagatatttttgctcaa
attttgcttatagctaaagatgaaactggttataaaaatttactcaaactatcaagtctt
acttttattaaaaatgatcgtaagatatgcgatcacattgattttgaagatttaatcgaa
tatcaagaaggattaataggattatgctgttataccgacggtattgtcggaaaatgcttg
ctagctcgcaacgaggagcaagcgatgctgtttgcacgtaaattacaggaaattttagga
gatcgtttttactttgagattatgagacatgagataccggaagaacagtttattgaggat
agttatattagaattgctgccgagcttgctattccgcttgttgctactaataaagttttg
tttagtgagaaaagcatgcatgatgcacatgatgtattgttatgtatatcagccggtgtt
actaaagaatatttggatcgaaaaacagttagcgaaaattgttattttagatcaccgcat
gagatgatagagcttttttccgatttacctagtgccatccaaaataccatgaatttaaga
gagcgttgttattttgccgcacatgcaaacccgccgatgctgcctaattttgccaccaaa
gatattagtgaaacggatttaattaaaaaagatgcaaaagaagggttgcttgcaaggctt
gctacaaagtttaaatctgaaaatatttcgttagagaatcaagaagaattgaaaaccgaa
tattttgctcgtcttaattatgagctggatattatctgtaatatgaattttgccggttat
tttttgattgtatctgattttattaaatggagtaaaaaagagggtattttagtcggaccg
ggtagaggatcgggagcaggctcggttgttgcttggagcttgcttattactgatctcgat
ccgattaaatttggcttattatttgaaagatttttaaatcctgaacgtatttcaatgcct
gattttgatattgatttttgtcaggaaaggcgtgaggaagtaattaattacgtacgttcc
aaatacggtaataatagagtaggacagattataactttcggtaagatgcaggcaaaggct
gtaattaaggatgtcgctcgtgttcttagcttaccttataaattcgctgattatctaacg
gagcttgtcccttttagtgcagttaatccagttagcttagaacaggcaatgcgtgaagtt
ccggagcttgcaaatgccgctaaaggtaatgggctgtataatttagacggtgaagcggag
ttaattaagctagtgcttgatacttcgttaattcttgaggggctgcataggcattcctca
actcatgctgcaggaatcgtaatagcaggtactgatttagtcgatatagtaccggtatat
aaagatgctaactccgatatgctggtagtcggttattctatgaaatattctgagattgcc
ggtttaattaaatttgattttttagggctacaaaccctaacggttattaccgattgtaag
aaactgcttaaagagcaagggatagaagtagattttaacaatatgacgtttgatgataat
aagacttatcaaatgttgtgtaaaggtaaaggagtcggcgttttccaatttgaaagtatc
gggatgaaagatgcacttagacgccttaaacctgattctatacatgatttgatagctctt
ggtgcgttataccgtcctggtcctatggaaaatattcctacctatatagcttgtaagcat
aaattacaacagcctgattatttacatgagctattgaagccaatcttagaagaaacttac
ggagtggtgatatatcaggagcaggtacaaagaattgctcaggttcttgcaggttatacg
ctaggagctgccgatttacttcgtagagcaatgggtaagaagataaaaaaagaaatggag
gagcaggaagaaatttttgttaaaggagcaattgctaataatatttcggaatctcaagct
aaatccatttttgcaaccgtggctaaatttgccggatacggttttaataaggcacatgct
gcgtcttacggtgttatttcataccaaactgcatatcttaaagctaattatcctgctgaa
tttttagtagcatgcttaaatcttgaattgaatcatcacgataaaattaatttattttta
caagaagcaaaagataacggcataaaaattattgcacctaatattaatatttctgaaggg
tattttagtgtaaagttttcggacactgtcatcccgcatagcgtaaagcctgtcataccg
caacttgatcgcggtatccaggaaatttcaaaagataccgtggtcaagccacggtatgac
atcgcgggtgcaataatctttgccttaggtgctattaagggagttacgccgaatttcggt
aagttagtaacggatgagcgaaaagcaagaggggcgtttaaatcaattactgattttatt
gaaagattaccccccaaatctattaatagtaaattattggaaaatttaatcaagtcaggc
tgttttgatgagctgcatgataatcgattgcaattattgtcaagcattccaaaattgctt
tcttattcaactgcatatcacgaagagcaggaatctaatcaatttagcttaattaaagtt
tctagtttaagtccaactattttagtatcaagcgattatgccgataaaaatactttagcc
ttttatgaatttgaggctatgggtttatttatctctaatcatcctcttacggaatatcaa
gaaatatttagtcgtttaaatattttaaatactgcggatttgcataataacttacctgat
ggtactaaccgagtaaatcttgccggtgtaatacaaaaaaaggattctcgtatgtcggca
agaggtaggtttgtgacgctcgtgctttccgatcctgagaatatctttgaacttagtatt
tttagtgaggaagttttaaaagattatgtacatttactggatgttaaaagtttggtagtt
gttaattgtgacatagttaaagatgagggaggaataaaactaacggcaaaaagcttttca
tcaattgaggatgcaattaataataaacaatttgaactacagttttatccacaaaatcat
gaagaattacggcagatagtaaccttgcttgcagctcgtataaataacgaagatcagagt
aatgctaaagctacaatctatttacaaagcgcagatgtaaagaattttatagcaaaaatt
acattacctgaaaaatttttgctccaagggcaagattttgagattttaaaaggatatagt
aaatag
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