Rhizobium jaguaris: CCGE525_10155
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Entry
CCGE525_10155 CDS
T05891
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rjg
Rhizobium jaguaris
Pathway
rjg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rjg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CCGE525_10155 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rjg03400
]
CCGE525_10155 (mfd)
Enzymes [BR:
rjg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CCGE525_10155 (mfd)
DNA repair and recombination proteins [BR:
rjg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CCGE525_10155 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AYG59119
UniProt:
A0A387FL35
LinkDB
All DBs
Position
2065309..2068809
Genome browser
AA seq
1166 aa
AA seq
DB search
MIPGFDAKKLIAASEPLTVGHVPSGLEPFLLAELAKTGQPVAYVMSDGQHMADVEQMLGF
IAPDIPVLTLPAWDCLPYDRVSPSSDTSARRLAALSGLIAHHHKPHAAIVLVTVNAMLQK
VAPQDVIESLTFSARPGNQVRMDDIASRLERNGFDRVATVREVGEYAVRGGILDVFVPGT
EEPVRLDFFGDTLESIRSFDPASQRTTGQIRSLDLNPMSEVTLTPDTISRFRKNYLSAFG
AATRDDALYVAVSEGRRYAGMEHWLPLFYEKLETVFDYLRGFRLVTDHTVREAAEERSKL
VFDYYDARLNSGQATKGQMAQGTPYKPVTPGQLYLDGSTFAKALDAFNAMRISPFNEHEG
EARRVVSVDARQGPRWARSSTDSADNERVNVFDAVVKHIADRRASGGKVLISAWTEGSLD
RLLQVLAEHGLARVKTIEAFKDIRSLEKGEAAAAVLSLEAGFEAGDLIVIGEQDILGDRM
VRRSKRRKRAADFISEVAGLDEGSIVVHAEHGIGRFVGLRTIEAAGAPHACLELQYADDA
KLFLPVENIDLLSRYGGEGTEAQLDKLGGGAWQMRKAKLKKRLLDMAGALIRVAAERLTR
HAPVLTSPEGIYDEFAARFPYDETEDQMNAIDAVRDDLGAGRPMDRLVCGDVGFGKTEVA
LRAAFVAAMNGVQVAVVVPTTLLSRQHFKTFSERFRGLPIRIQQASRLVGSKDLALTKKE
VADGKTDIVVGTHALLGAGIQFANLGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSATP
IPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLVIRETLMREHYRGGQSFYVCPR
LADLADIHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDVP
TANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTTTAERRLKVLQSLDT
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEIQDTGWS
PQISVGTPVMIPDDYVPDLHLRMALYRRLGEITEIKEIDSFGAEMIDRFGPMPIEVQHLL
KIVYIKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPANLVGYIAKQGTMAKIRPDQSVFL
TRDLPTPEKRLQGAAVLMTQLAELAK
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgatccccggtttcgacgcgaagaagctgatcgcggcaagcgagccgctgacggtcggc
catgttccctccggcctggagcctttcctgctggccgagctggctaagaccggccagccg
gttgcctatgtcatgtccgacggccagcacatggctgatgtcgaacagatgctcggcttc
atcgcgcccgacattccggtattgacgctgcccgcctgggactgcctgccctatgaccgc
gtttcgccgagttccgacacttcggcccgccgtctcgcggcgctctccggtctgatcgcc
catcatcacaagccgcatgccgcaatcgtcctggtgacggtcaatgccatgttgcagaag
gtggcgccgcaggatgtgatcgagagcctgacgttctcggcccggccgggcaatcaggtg
cgcatggacgacatcgccagccgcctggagcgcaatggcttcgatcgcgtcgcgaccgtg
cgcgaagtcggcgaatatgccgtgcgcggcggcattctcgatgtcttcgtgccgggtacg
gaagaacccgtgcgcctggatttcttcggcgacacgctggaaagcatccgcagtttcgat
cccgccagccagcgcaccaccggccagatccgctccctcgacctcaacccgatgagcgag
gtgacgctgacgccggatacgatcagccgttttcgcaagaactatctttccgctttcggc
gccgccacgcgcgacgacgcgctctatgtggcggtctcggaaggccgtcgctatgccggt
atggaacactggctgccgctattctacgagaagctggagacggttttcgattatctccgc
ggcttccggctggtcaccgatcacacggtgcgggaagccgccgaggagcgctccaagctc
gttttcgactattacgacgctcgcctgaattccgggcaggcgaccaaggggcagatggcg
cagggcacgccctacaagccggtaacgcccggccagctctatctcgatggcagcaccttc
gccaaggcgctcgatgccttcaacgctatgcgtatctcgcccttcaacgagcacgagggt
gaggctcgacgcgtggtcagcgtcgatgcccgccaagggccgcgctgggcccgatcatcg
accgatagcgctgataacgagcgcgtcaacgtctttgacgctgtggtcaaacacatcgct
gatcgccgcgcatccggcggcaaggtcctgatatcggcctggaccgaaggctcgcttgat
cgcctgctgcaggtgctggccgaacacgggcttgcccgcgtcaagacgatcgaggccttc
aaggatattcgatcgctggaaaagggcgaggcggcggcggccgtgctgagcctggaagcc
ggcttcgaggctggtgatctcatcgttatcggcgagcaggacattctcggcgaccgcatg
gtgcgccgctccaagcgccgcaagcgcgccgccgatttcatctccgaagtggccggtctc
gacgaaggttcgatcgtcgttcatgccgaacacggtatcggccgcttcgtcggcctccgg
accatcgaggcggctggcgcgccgcacgcctgtctcgagctgcaatatgcggacgacgcc
aaactgttcctgccggtcgaaaacatcgatctcctgtcgcgttacggcggcgagggcacc
gaggcgcagctcgacaagctcggcggcggcgcctggcagatgcgcaaggccaagctcaag
aagcgcctgctggatatggccggtgcgctgatccgcgttgcagccgaacgcctgacccgg
cacgcgccggtactgacctcgccggaagggatttacgacgagttcgccgctcgcttccct
tacgatgagaccgaagaccagatgaatgccatcgacgcggtgcgcgacgatctcggcgcc
ggccggcccatggatcgtctcgtctgcggcgacgttggcttcggcaagacggaggtggcg
ctgcgtgccgccttcgtggccgccatgaacggcgtgcaggtcgccgtcgtggtgccgacg
acgctgctttcccgtcagcatttcaagaccttctccgagcgcttccgtggcctgccgatc
cggattcagcaggcatcgcgccttgtcggctccaaggatctggcgttgaccaagaaggaa
gtggctgacggcaagaccgatatcgtcgtcggcacgcatgcgctgctcggcgccggcatc
cagttcgccaatctcggcctgctcgtgatcgacgaggagcagcatttcggcgtgaagcac
aaggagcggctgaaggagctgaaaagcgatgtgcatgtgctgacgctatcggcgacgccg
atcccgcgcacgctgcagctcgccatgaccggcgtgcgcgaactgtcgctgatcaccacg
ccaccggtcgatcgcatggctgtgcgcaccttcatctcgcccttcgattcgctcgtcatc
cgcgagacgctgatgcgcgagcattatcgcggcggccagagcttctatgtctgcccgcgc
cttgccgatctcgccgacattcatgctttcctgcagtccgatgtgccggagctgaaggtc
gccgtcgcccacggccagatgccggcgggtgagctcgaagacatcatgaacgccttctac
gaaggccgctacgacgtgctgctgtccaccaccatcgtcgaatccggtctcgacgtgccg
acggccaatacgctgatcgtccaccgtgccgatatgttcggcctggcgcagctctaccag
ttgcgcggccgcgtcggccgttcgaaggtgcgcgccttcgccctgttcaccctgccggtc
aacaaggtgctgacgacgaccgcggagcgccgcctcaaggtgctgcagtcgctcgacaca
ctcggcgccggtttccagctcgcaagccacgatctggatatccgcggtgccggcaatctg
ctcggcgaggaacagtccgggcatatcaaggaagtgggtttcgagctctaccagcagatg
ctcgaagaggcggtcgcagaggtgaagggcgtcgacgagatccaggataccggctggtcg
ccgcagatttccgtcggcacaccggtcatgatccccgatgattacgtgccggatctgcat
ctgcgcatggcgctctatcgccgcctcggcgagatcacggaaatcaaggagatcgacagt
ttcggcgccgaaatgatcgatcggtttggaccgatgccgatcgaggtgcagcatctcctg
aagatcgtctacatcaagtcgctctgccgcacagccaacgtcgagaaacttgacgccggc
ccgaagggcgtcgtcgtgcaattccgcaacaaggagttcccgaacccagccaatcttgtt
ggctatatcgccaagcagggcaccatggcaaaaatccgccccgaccagagcgtgttcctg
acccgcgacctgccgacaccggaaaagcggctgcagggcgcggctgtgctgatgacgcaa
ttggcggaattggcgaagtag
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