Rhizobium jaguaris: CCGE525_14575
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Entry
CCGE525_14575 CDS
T05891
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rjg
Rhizobium jaguaris
Pathway
rjg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rjg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCGE525_14575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rjg03019
]
CCGE525_14575
Enzymes [BR:
rjg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CCGE525_14575
Messenger RNA biogenesis [BR:
rjg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CCGE525_14575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
NAT10_TcmA_helicase
Utp25_C
AAA_19
HEM4
Flavi_DEAD
CMS1
Motif
Other DBs
NCBI-ProteinID:
AYG59898
UniProt:
A0A387FLZ4
LinkDB
All DBs
Position
2985790..2987499
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AA seq
569 aa
AA seq
DB search
MVRSGLFALAPPKGIDLTDFHSLGLSKQIVDTLSQNNFATPTPIQAQAIPLVLQGRDLIG
LAQTGTGKTAAFGLPIIEMLLKDAKRPDNRTVRTLILAPTRELVNQIADNLKLFVRKTPL
RINVVVGGASINKQQLQLERGTDILVATPGRLLDLINRRALSLGQVSYLVLDEADQMLDL
GFIHDLRKIAKLVPAKRQTLLFSATMPKSIADLASDYLTDPVKVEVTPPGKAADKVEQYV
HFVAGQNHKTEILKETISANPDGRAIVFLRTKHGAEKLMKHLDHVGFAAASIHGNKSQGQ
RERALKAFRDGEVRVLVATDVAARGIDIPGVSHVYNYDLPEVPDAYVHRIGRTARAGRDG
IAIAFCSPDEIRLLRDIERLMGIEIAVASGEAPADRGRPARGNNRGGGRGGQGQGRGAGQ
GRSEGRPARPARRPFFDKENGEARSQAGERQEGRPHEGRPQRENNRNADFRGQRRNERTP
RPEVDYDLASTSDFRPAKKPHHNGPANANGAAHEAGAHRGQRHAHSRPSGRHNEERGQGH
AHGEHREGGNGGMKRRGPRNGNGQRRERA
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgatccggcctatttgctttggcgcccccgaaaggtattgatttgaccgatttt
cattcgcttggtctctccaagcagatcgtcgatacgctgtcgcagaacaacttcgcgacg
ccgacgccgatccaggcacaggccatcccgcttgttctccagggccgcgatctcatcggc
ctcgcccagaccggcaccggcaagaccgctgcattcggcctgccgatcatcgaaatgctg
cttaaggacgccaagcgacccgacaaccgcaccgtccgcacgctcatccttgcgccaacc
cgcgaactggtgaaccagatcgccgacaatcttaagctcttcgtccgcaagacaccgctg
agaatcaacgtcgtggtcggcggcgcctcgatcaacaagcaacagctccagctcgaacgc
ggcaccgacatccttgtcgccacccctggccgcctgctcgacctcatcaaccgccgcgcc
ctgtcgctcggccaggtcagctatctcgtcctcgacgaggccgaccagatgctcgacctc
ggctttatccacgacctgcgcaagatcgccaagctcgtgcccgccaagcgccagaccctg
ctgttctcagccaccatgccgaagtcgatcgcggatctcgcttccgactatctgaccgat
ccggtcaaggtggaagttaccccgccgggtaaggcggccgacaaggtcgagcagtatgtc
cacttcgttgccggccagaaccataagaccgagatcctcaaggaaacgatatccgccaat
ccggatggccgcgctatcgtgttcctgcgcaccaagcacggtgccgagaagctgatgaag
catctcgaccacgtcggctttgccgcggcctccatccacggcaacaagagccaaggccag
cgcgagcgcgcgcttaaggcttttcgtgacggtgaggttcgagttctcgtcgctaccgac
gtcgccgcccgcggcatcgacattcccggcgtttcgcatgtctataactacgatctgccg
gaagtgccggacgcctatgtccatcgcattggccgcaccgcgcgcgccggccgtgacggt
atcgccatcgccttctgctcgccggatgagatccgcttgctgcgcgacatcgagcgcctg
atgggcatcgaaatcgccgttgccagtggcgaagctccggcggaccgtggccgtccggct
cgcggcaacaaccgcggcggcggtcgtggcggccagggtcagggccgtggcgcaggccag
ggtcgctccgaaggtcgtccggctcgcccggcccgtcgtcccttcttcgacaaagaaaac
ggcgaggcccgaagccaggccggcgagcgccaggagggccgtccacacgaaggtcgtccg
cagcgcgaaaacaatcgcaatgccgacttccgcggccagcgccgcaacgagcgcacgccg
cgcccggaagtggactacgatctcgcttcgacgtccgatttccgtccggccaagaagccg
catcataacggcccggcaaacgccaatggcgcagcccacgaagccggcgcccatcgcggc
cagcgccacgcccatagccgcccctccggccgccataatgaggagcgcggccaaggccac
gcccatggcgaacaccgcgaaggcggcaatggcgggatgaagcgccgcgggccgcgcaac
ggcaacggccagcgtcgcgaacgcgcttga
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