KEGG   Rhizobium jaguaris: CCGE525_22135
Entry
CCGE525_22135     CDS       T05891                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
rjg  Rhizobium jaguaris
Pathway
rjg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rjg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CCGE525_22135 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rjg03021]
    CCGE525_22135 (rho)
   03019 Messenger RNA biogenesis [BR:rjg03019]
    CCGE525_22135 (rho)
Transcription machinery [BR:rjg03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     CCGE525_22135 (rho)
Messenger RNA biogenesis [BR:rjg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     CCGE525_22135 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 NACHT S1CSD-TOTE-2 DUF6360 AAA ATPase_2
Other DBs
NCBI-ProteinID: AYG61214
UniProt: A0A387FYP1
LinkDB
Position
complement(4572426..4573691)
AA seq 421 aa
MAEMKLQELKNKSPTDLLAFAESLEVENASTMRKQELMFAILKVLASQDVEIIGEGVVEV
LQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVN
TINFDDPEKIRHKVHFDNLTPLYPNERFRMELDVPTSKDLSPRVIDLVAPLGKGQRGLIV
APPRTGKTVLLQNIAHSITANHPDCYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA
MDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKNNPDFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggctgaaatgaagctccaagaacttaagaacaagtccccgaccgatctcctggccttt
gccgaatcgctcgaggtcgaaaatgccagcacgatgcgcaaacaggaactgatgtttgcc
attctgaaggtgcttgccagccaggacgtagaaattatcggcgaaggcgttgtcgaggtc
ctgcaggacggattcggctttctgcgctcggccaatgccaactatctgccgggcccggac
gatatctatatctctccctcccagatccgccgcttttcgctgaagacgggcgatacggtc
gaggggccgatccgcggaccgaaggaaggcgagcgctattttgcgctgttgaaggttaac
accatcaatttcgacgatccggaaaagatccgtcacaaggtccacttcgacaatctgacg
ccgctttatccgaacgagcgcttccgcatggagctcgacgttccgacctccaaggacctg
tcgccgcgcgtcatcgacctggtggcaccgctcggcaaaggccagcgcggtttgatcgtg
gcaccaccacgcaccggtaagacggtactgttgcagaacatcgcccattcgatcaccgcc
aaccatccggattgctatctgatcgttcttctgatcgacgaacgtcctgaggaagtcacg
gatatgcagcgttctgtacgcggcgaagtcatttcgtcgaccttcgacgaaccggccgtc
cgccacgtgcaggttgccgagatggtcatcgaaaaggctaagcgtcttgtcgaacatggc
cgtgacgtggttatcctgcttgattcgatcacgcgtctcggccgtgcctacaacacggtg
gtcccctcctctggtaaggttctgaccggcggtgtcgacgccaatgccttgcagcgcccg
aagcgtttcttcggcgcggcgcgtaacatcgaagaaggcggttcgctgacaatcatcgcg
accgcgctgatcgataccggcagccgtatggacgaagtgatcttcgaagaattcaagggc
accggcaactccgaaatcgttctggaccgcaaggtcgccgacaagcgcatcttcccggca
atggatattctgaagtccggcactcgtaaggaagacctgctggtgccgcgtcaggatctc
cagaagatatttgttcttcgtcgtatccttgccccgatgggcacgacggatgcgatcgag
ttcctgatcgacaagctaaagcagacgaagaataatccggatttcttcgactcgatgaat
acgtga

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