Rhinichthys klamathensis goyatoka (western speckled dace): 130068989
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Entry
130068989 CDS
T09701
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
130068989 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rkg03400
]
130068989 (msh6)
DNA repair and recombination proteins [BR:
rkg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
130068989 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
130068989
NCBI-ProteinID:
XP_056088626
LinkDB
All DBs
Position
Unknown
AA seq
1373 aa
AA seq
DB search
MAKQSSLFNFFTKSPPPAPKAKSNPSPVEADAVSRSNTSPKEQANVNGKKTPAKPAKSQV
KAGHAKLFGDKADTAKEREQSCMFSAGTLVWAKMEGHPWWPCMVVPQPLTGQQMRGRGRD
QRLHVHFFDEPPTRGWVNTKYIREYQGSDSADARSGGVFFSGKPVIRKAMELADAAMKQS
PEQRLKMSVCMDPSDQEEENDEDMEVEKSTLTDEEMTEEEAEEKVKPSRRLSRAAAEKGQ
KSKRRRIVVASDSDDSGEEFKPEQAKVSSDEEDEEDEEVVSSEAEEEESEQEPEPESPVK
PVKRKRPLVKSVKSQNKPDTPKRAPATLPSVTSNTKSRLSAFSAPDNFESQSTSANGTEG
GSTVWDHEKLDWLMDGKRKDAQRKRQSDENYDPTTLYVPDDFLNRTTPGMRRWWQLKSEM
FDTVLFYKVGKFYELYHMDAVIGVNELGLTFMKGAWAHSGFPEIGFGRFSDVLVQKGYKV
ARVEQTETPDMMEARCKKLTRPTKFDRVVKREVCRIITRGTQTYSVLDGAPSETQSKYLL
SIKEKSEEDSAGHCHIYGVCFIDTSVGRFHIGQFQDDRHCSRLRTLVAHYSPAQVIFEKG
NPSTETLKIFKAILASTLQEGLNAGSQFWDAQKTLKVLAEEDYFKESKASADDEKASVLP
PTLKAMTSECDALSLTPKTGYELALSALGGCMFYLKKCLVDQELFSMGNFEEYVPVDVEM
EQAGGASCFFAQTRQKMVLDGVTLTNLEILQNSSTGGPEGTLLERLDTCCTPFGKRLLKQ
WLCAPLCNPSSIGDRLDALEDLMGAPSQVTEVTDLLKKLPDLERLLSKIHSMGTPVKGQD
HPDSRAVLYEEVVYSKRKIADFLAALEGFKVMKEIVSIMEPVAEGFRSKLMRQVLLLKTE
NEDGLFPNLSPELKRWDKAFDHQKARTTGVITPKAGFDPEYDQALDGIKDCEKGLQEYLD
RQKKRLGCKNLSYWGTGRNRYQLEVPDSVSERSVPEEYEVRSTKKGWKRYSTKEIERLFS
EIQSWEDKRDTALKDCMRRLFYNFDKNYKDWQTAVECMAVLDVLLSMSRYSQSGDGPMAR
PEMVLPGDGSQSHPFLDLRASRHPCVTKTFFGDDFIPNDIFIACPSGEEEEGQDNDKALA
PCVLVTGPNMGGKSTLMRQCGLVVILAQLGCYVPAESLRLTPVDRVFTRLGASDRIMSGE
STFFVELSETASILLHATNHSLVLLDELGRGTATYDGTAIASAVVKELSEKICCRTLFST
HYHSLVEEHVQDPAVRLGHMACMVENECEDPSQETITFLYKFICGACPKSYGFNAARLAN
IPEEVIQSGHKKAREFERSTVSLRIFKKLCSLAEASSADREQFSALVQMIGGL
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagcaaagttccctttttaatttcttcacaaagtcgcctccacccgcgccgaag
gccaaatccaacccttctccggtggaggcagatgcggtgagcagatccaacacctcacct
aaagaacaagccaacgtcaacggcaagaaaacaccagcaaaacctgccaaatctcaagtt
aaagctggacatgcgaaactgttcggggacaaagcagacactgcaaaggagagagaacag
tcatgcatgtttagtgctggcactctggtatgggccaagatggaaggacatccctggtgg
ccctgtatggttgttcctcagcctctcaccggacagcagatgaggggccgtggccgagac
caaaggcttcacgttcactttttcgatgaaccaccaacccgaggctgggttaacacaaaa
tacataagagagtaccaaggctctgatagcgcagatgccagatccggaggcgtgttcttc
agcggtaagcctgttatacgtaaagcaatggagctggccgatgcggcaatgaagcagagt
ccagagcagagactgaagatgtccgtgtgcatggatccctccgatcaggaagaggagaat
gatgaggatatggaggttgagaaatcaactctaacagatgaggaaatgactgaggaagag
gctgaagaaaaggtgaagcccagccgacgtttatctcgtgctgcggctgaaaagggtcag
aagtcgaagcgtcggcgcattgtggtggcatctgacagcgatgactccggcgaagagttc
aaacctgagcaagcaaaagtaagcagtgacgaggaagacgaggaggacgaggaggtagtg
agtagcgaggctgaggaagaagaaagcgagcaggagcccgaaccagaaagccctgtgaaa
ccggtcaagcgcaaacgtcctttagtgaagtctgttaaatcacagaacaaaccagatacc
ccaaagcgagcacctgcaactttaccatccgtgacgtccaacaccaaatctcgactctct
gctttctctgccccagacaacttcgaaagtcagagtaccagtgcaaacgggacggaggga
ggatctactgtgtgggaccatgagaaactcgactggctgatggacggcaagagaaaggat
gcgcagcgtaaacgacaatctgatgaaaactacgaccccacgactctatatgttcccgat
gatttccttaacaggacaacgcctggaatgcgccgttggtggcagctgaagtctgagatg
ttcgataccgttttgttctacaaagtcggaaagttctacgagctctaccatatggacgcg
gtgattggcgtcaacgaactcggccttaccttcatgaagggcgcttgggcccattcaggc
ttccccgagattggctttggacgcttctcagacgtactcgtgcaaaagggctacaaagtg
gctcgtgtggaacagaccgagacccctgatatgatggaagcacgatgcaagaaattgacg
cgtcccaccaaatttgaccgtgtcgtcaagcgagaggtttgccgaatcatcacgcgaggg
actcagacgtacagcgtccttgatggcgccccttctgaaactcaaagtaaatatctgttg
agcattaaagagaagagcgaggaggacagtgcaggccattgccacatctatggggtttgt
ttcattgacacgtcggtggggcgcttccatatcggtcaatttcaggatgaccgccattgt
tcccgtttgcgtactctggttgcacactattctcctgcccaggttattttcgagaagggc
aatccgtcaaccgagacattgaaaatctttaaggccatcttggcctccactttacaagaa
ggcctcaatgctggttcgcagttttgggatgcccagaagaccttaaaggtccttgctgag
gaagactactttaaagagagcaaagcatcagctgatgatgaaaaggcatcagtgcttcct
ccaactctcaaagctatgacgtccgaatgtgacgctctaagtctcactccaaagacgggt
tatgaactcgctctttctgcccttggcggctgcatgttttacctcaagaaatgtctagtg
gaccaggagcttttttccatgggcaactttgaggagtatgttcctgtcgatgtggagatg
gagcaggctgggggagcgtcttgtttttttgcccagacccgtcaaaaaatggttttggat
ggagtgacccttactaaccttgagatccttcagaatagctcgaccggtggtcctgagggc
accctacttgaacgattggacacgtgttgcactcccttcggcaaaaggttgttgaagcaa
tggctctgcgcccctctttgtaatccatcctccattggtgatcgtttagatgctctggag
gacctgatgggcgctccatctcaagtgaccgaagtcaccgacctactaaagaagcttccg
gatctcgaaaggctacttagcaagatccacagcatgggtactcctgttaaaggacaagac
cacccggactcccgagccgttctgtacgaggaggtcgtctacagcaaacgtaagatcgct
gactttctcgcagcacttgagggttttaaagttatgaaagaaatcgtgtcgatcatggag
cccgtcgccgaaggcttccgatcgaaactaatgcgccaagtgttgctcctcaagacagaa
aatgaagatgggcttttccccaacctttcgccagagctcaaacgttgggacaaagctttc
gaccatcagaaagctcgaaccacaggtgtcataactccaaaagctggctttgatccggag
tacgaccaagccctagacggaattaaagactgtgagaaaggcctgcaggaatacctggac
cgacagaagaagagattgggctgtaagaatctatcatactggggaacgggaaggaaccgc
taccagctggaagtccctgacagtgtttccgagaggagcgtgccagaggagtacgaggtg
aggtccactaagaagggctggaagcgttactctaccaaagagatcgagcggctgttttca
gagatacagagctgggaagacaaaagagacacagcgcttaaggattgcatgagaagactc
ttctacaatttcgacaagaattacaaagactggcagacagccgttgagtgcatggctgta
cttgatgtgctgttgagcatgtcccggtacagtcagagcggcgacgggcccatggcgaga
ccggagatggttcttccgggtgacgggtctcagtcgcaccccttcctggatctgagagcg
tcccgtcacccttgtgtcaccaagaccttcttcggtgatgacttcattcccaatgacatc
ttcatcgcttgccctagcggtgaagaagaagagggtcaagataatgataaagcacttgcc
ccatgtgtgttagtcaccgggccaaacatgggaggcaagtccaccttaatgagacagtgt
ggtctggtggtgatcttggcccagctgggctgttacgttcctgctgagagtttgcgtctc
actcctgtggaccgagtgttcactcgtcttggcgcctctgatcgtataatgtcaggtgaa
agtacgttctttgtggagctcagcgagactgctagcatacttttgcacgccaccaaccac
tccctcgtcctgctcgatgaactgggccgaggtacggccacgtatgacggcacagccatc
gcgagcgcagtggtgaaggagctgtcggagaagatctgctgtcggaccctgttctccact
cattaccactcactggtggaggagcacgtccaggaccccgccgtgagactcggacacatg
gcctgtatggtggagaatgaatgcgaggaccccagtcaggagaccatcaccttcctctac
aagttcatctgtggcgcgtgtcccaagagttacggcttcaacgcagcgcgcttggcaaac
atcccggaggaagtcatccagtcgggccataagaaggcccgtgagtttgagaggagcacc
gtgtctctcaggatattcaagaaactgtgctcattggctgaagcctcgtcagctgatcgg
gagcagttctcagcgctggttcagatgatcggcggcctgtga
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