Rhinichthys klamathensis goyatoka (western speckled dace): 130069322
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Entry
130069322 CDS
T09701
Symbol
hif1aa
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha a isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04137
Mitophagy - animal
rkg04140
Autophagy - animal
rkg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
130069322 (hif1aa)
04137 Mitophagy - animal
130069322 (hif1aa)
04148 Efferocytosis
130069322 (hif1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rkg03000
]
130069322 (hif1aa)
Transcription factors [BR:
rkg03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
130069322 (hif1aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
Hl_ALG44
PAS_2
Motif
Other DBs
NCBI-GeneID:
130069322
NCBI-ProteinID:
XP_056089111
LinkDB
All DBs
Position
Unknown
AA seq
720 aa
AA seq
DB search
MDSVAPGKKRVSSERRKEKSRDAARCRRGKESEVFYELARELPFPHSITSNLDKASVMRL
ALSYLRLRKLLNTDILDVETELGSQWNSSYLKALDGFLMVLSADGDIVYLSENVSKCLGL
PQIDLTGHSVFDFTHPCDHEELREMLAHRNGLGKKAKEFPTDRSFLLRMKCTLTNRGRTV
NVKSASWKVLRCSGHIHTADGVVKEKNACSTYLVLICESIPHPANIEAPLDSRTFLSRHT
LDMRFTYCDERITELLGFDPVDLLQHSVYEYYHALDSGHMTKTHHKLFVKGQVCTGQYRL
LAKAGGFVWAETQATVIYNSKNSQPQCVVCVNYILSGIEQPKQILSLQQTNSTTIKREQE
EHQEEFLGADVTMAELKEEGKQRDEKEEESVEEELNDSLKGEPAALTVDPVLTLDFTTTD
SAISVLTEIPLYNDVMLPCSSVLLPLSPLSHPCSSLNEDDASTAHLQPDDFPFPQSSASS
RSQVDLHVDSEFSDQLKPDHVEKLFSMDMESKTPFITQGVGLDLEMLAPYIPMDDDFQLR
TVSPAESMCSSPGSALELTPSSSTQTAPALPAAPTDLMSCDTVQQDTRTTEQDSSREIIQ
DSDISSKCQTNPKLLKRKLETIPLSEAIRLGSVLQLVTDFPEKKARKSDASSSEGIRHAT
ILLLPSDVASRLLSRSSEGGAITMPLPQLTRYDCEVNVPVTGRQHLLQGEELLCALDLVI
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggattcagtcgcacctggaaaaaaaagggtgagctcagagcgaaggaaggagaaatcc
cgagatgcagcacgttgtcggagaggaaaagaatcggaggtgttttatgaactggccaga
gaactacccttcccccacagcatcacctctaacctggataaagcatcagtcatgagactc
gcactcagttacctgcgcctgcgtaagctactgaacacagatatactggatgtggagact
gaattgggctctcagtggaacagttcatatctgaaagctctggatgggtttctcatggtt
ctttctgctgatggtgacatcgtctacctgtcagagaatgtcagcaagtgtctaggccta
cctcagattgaccttactggacacagtgtgtttgactttactcatccatgtgatcacgag
gagctcagagaaatgctggcacacagaaatggtctgggtaagaaagcaaaggagtttccc
acagatagaagttttctattgaggatgaaatgtacactgaccaacagagggcgtactgtc
aatgtcaaatctgcctcctggaaggtgctgcggtgttcgggccatatccacacagcagat
ggtgtcgtgaaggaaaaaaatgcgtgttcaacgtacctggtgctcatctgtgagtctatt
ccccacccggcaaacattgaggctcctctggattctagaacattcctcagccgccacact
ttagatatgcgcttcacctactgcgatgagaggatcacagagctgttgggttttgatcca
gtggatctgttgcagcattctgtgtatgaatactatcacgctctggattctggccacatg
accaaaacacaccacaagctgtttgtaaagggacaagtgtgtaccggacagtaccggctg
ctggctaaagcaggaggatttgtttgggcagagactcaggccactgtgatctataacagt
aaaaactcccagccacagtgtgtggtctgcgtcaactacatcctcagtggcattgaacag
cccaaacaaatcctgtcccttcagcaaaccaacagcacaacaataaagcgagaacaggaa
gaacaccaggaggagttccttggggctgatgtgaccatggctgagttgaaagaggaggga
aaacagagggatgaaaaggaagaggagtctgtggaagaggagttaaatgacagcctgaag
ggggagccagcggcactgactgtagaccctgtcctcacactggatttcactaccacagac
tcggcgatctctgtgctgacagaaattcctctctacaacgatgtgatgttgccctgttca
agtgtactgctacccctctcacccctctctcatccctgttcctccctaaatgaggatgat
gcctccacagcccacctacaacctgatgacttccccttcccacaatcttcggcttcttcc
agatcccaggttgatctccacgtggattcagaatttagtgaccagctaaaaccggatcac
gtggagaaactattttccatggatatggagtccaagacaccctttattacacagggagtt
ggtttggatctggagatgttagctccatacattcccatggatgatgatttccagctgcgg
actgtttctccagccgagtcgatgtgttccagcccaggttcagcgcttgaactgaccccc
tccagcagcacgcaaactgcccctgctctcccagcagcccctacagacttgatgtcctgt
gacaccgttcagcaggacactagaaccacagagcaggacagcagcagagaaattattcaa
gacagtgatatttcttctaaatgtcagaccaacccaaagctgctcaagaggaaacttgag
accatacctctgtctgaagcaataagactggggtctgtgttgcagttggtgactgatttt
ccagagaaaaaggccagaaaatcagatgcttcatcatcagaagggattcgacatgccacc
atactgttgctgccatctgatgttgcgagtagattgttgagcagatcgtcagagggcgga
gccataactatgcccctcccccagcttacccgttacgactgtgaggtaaatgtgcctgtg
actggacggcagcacttgttacagggggaggagctactgtgtgccttagacctagttatt
taa
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