Rhinichthys klamathensis goyatoka (western speckled dace): 130069616
Help
Entry
130069616 CDS
T09701
Symbol
tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 homolog
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
130069616 (tgfbrap1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rkg04131
]
130069616 (tgfbrap1)
Membrane trafficking [BR:
rkg04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
130069616 (tgfbrap1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
130069616
NCBI-ProteinID:
XP_056089577
LinkDB
All DBs
Position
Unknown
AA seq
866 aa
AA seq
DB search
MSVKAFELVPAVEREHVMGEKVRINIECIECCGQHLYLGTNDCFIHHFILEEHTTATGKL
AYKAQKLLQKYLGLKKPVAELKAASALERLIVLCDSTITVVDMVTLELVPFGGTKLKGVT
AFCINENPVTGDAFCVEMAVVLARRRAVQICTVHEDKVLMLKEVTTPEQPCALSLDGYNI
CLALSTQYMILNYSTGASQDLFPYDCEERKPIVKRIGREEFLLAGPGGLGMFANAEGISQ
RAPVSWSESVIAAAVCFPYVVALDESFVTVHSMLDQQLKQTLSFRDGHLMQDFEGKVVLA
SSKAVYMLVPLPLERQIQDLLASHRVEEALTLTEAAQRNIPKEKYQILHKRILQQAGFIQ
FGQLQFLEAKEHFRKGQLDVRELISLYPLLLPASSSFTRCHPPLHEFADLNHLTQGDQEK
VQRFKRFLISYLHEVRSSDSANGFREDVDTALLKLYAETGHESLLDLLASDNACLLADSA
PWLEKHHKYYALGLLYHYNDQDSAALQMWVKIVNGDLQDSTRPDLFEYVVDFLSFCSNLD
LVWRHADWALQKDQKVGVQIFTKRPTSEEKMGQLNPNDVIAYLEKHSQALLLYLEHLVLE
KKLQKEKYHTHLAVLYADKVLGLISRPSANEEQLSAARQKLQRLLKESNLCRVQLLLGKI
QDSELLLLEQATLHGKLEEHDKALHILVHQLKDSPAAEEYCSWASASQDRSYRQKLFHQL
LSVYLDPDLPGGAQTIAAVDLLNRHAEDFDAVHVLKLLPEEWSLPLLRPFLCGALRASVH
ARCTSQVAVGLARAQNLQLQHDRLKYRGGPILVSEKKGCQLCHNTFSEPDCACLPGGMPV
HIHCVAKKALDLPKRHHENAHRSNHT
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgaaagcttttgagctggttcccgctgtggagcgggagcacgtgatgggcgaa
aaagtgcggataaacatcgaatgcattgagtgctgtggccaacatctgtacctgggcacc
aatgactgcttcatccatcacttcatactagaggagcacacgacagccacaggtaagctg
gcctacaaagcccagaaactcctccaaaaatacctgggcctgaagaagccagtagcagaa
ctgaaggccgcctctgctttggaacgtctaattgtcctctgtgattcaaccatcactgtt
gtggacatggttaccctggagcttgtcccctttggtggcactaagctcaaaggtgtgact
gcgttttgtatcaacgagaatccggtgacaggggatgcgttctgtgtggaaatggcggtg
gttttggcacgcagaagggcagtccagatatgtacggtccatgaggacaaggtgctaatg
ttaaaggaagtgaccacaccagaacagccctgtgccctgagcctggacgggtacaatatc
tgtcttgccctgtccacgcagtatatgattctgaactacagcacaggagcctctcaggat
ctgttcccttatgactgtgaagaaaggaaacccattgttaagaggatcggccgggaagag
tttcttttggctggcccaggcgggcttgggatgtttgctaatgcagaaggcatatctcag
cgtgctccggtgagctggtctgagagcgtgatcgcggcggctgtgtgtttcccgtatgtg
gtcgcgctggatgaaagctttgtgaccgttcacagcatgttggaccagcagctcaaacag
acactgtcattcagagatggacaccttatgcaggattttgaaggtaaggtggtgttggcc
tcatcaaaagcggtgtatatgctggtgcctctccctctagagcgtcagatccaagacctg
ttggcaagccatcgagtcgaggaagccctgaccctcaccgaggccgcacagagaaacatt
cccaaagagaaatatcagatattgcacaaaagaattctccaacaagcaggattcatccaa
tttggccagcttcagtttttagaagcgaaagagcattttaggaagggacagctggatgta
cgggagctgatctctctatatccgctgctcctgcccgcttcttcttctttcacacgttgc
catccaccacttcatgaatttgctgacctgaaccacctgacccagggggaccaggagaag
gtacagcgcttcaaacgttttctcatcagctacctacacgaggtgcgcagcagcgacagc
gctaatggtttccgtgaagacgtagatacggcgttgctaaagctgtacgcagagaccggc
cacgagagtcttctggacttgctggcctctgataatgcctgtcttctggcagacagcgcc
ccctggctggagaagcatcacaagtattatgctcttggacttctatatcactacaatgat
caggattctgctgctttacagatgtgggttaagattgtcaatggagatctccaagactca
acacgaccagatctgtttgaatatgttgtggattttcttagtttctgctccaaccttgac
cttgtgtggcggcatgcagactgggcactacagaaagatcaaaaggttggtgtgcaaatc
ttcaccaaaaggcctacctcagaggagaagatggggcagttaaacccaaatgatgtgatt
gcgtatttggagaaacacagtcaggctcttctgctctacctggaacacctggtgctagag
aagaaattgcagaaagagaagtatcacacacatctggctgtgctgtatgcagacaaagtc
ctgggcttgatatcacgaccatcagccaatgaggaacaactgtctgctgcccgccagaaa
ctacaacggttactgaaagagtccaatctctgcagagtccagttactactaggtaaaatt
caggactccgagctgctgctacttgagcaagctacacttcatggaaagttagaagaacat
gacaaggccttgcacattctagtgcaccagctcaaagactcgcctgcggctgaggaatac
tgctcttgggcctctgcatctcaggaccggtcctaccgtcagaagcttttccaccaactc
ttgagcgtttacttggacccggatttaccgggaggggcacaaacaatagctgcagtcgac
ctgcttaaccgacatgctgaagattttgacgcagtgcatgtgttaaagctccttccagag
gagtggtctctaccgttactccgtcctttcctgtgtggggcgctgagggctagtgtacat
gcacgctgcacttcccaggttgcagtggggctggcccgggcacaaaacctccagcttcag
catgacaggctgaagtatcgaggcggcccaatattagtgtctgaaaagaagggatgccag
ctgtgccacaacaccttcagcgagccagactgcgcctgcttgcctggcggaatgccggtc
cacattcactgtgtcgccaagaaagccctggacttgccaaagcgccatcatgaaaatgcc
caccgcagcaatcacacatga
DBGET
integrated database retrieval system
