Rhinichthys klamathensis goyatoka (western speckled dace): 130070272
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Entry
130070272 CDS
T09701
Symbol
casc3
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03013
Nucleocytoplasmic transport
rkg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130070272 (casc3)
03015 mRNA surveillance pathway
130070272 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130070272 (casc3)
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130070272 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
130070272
NCBI-ProteinID:
XP_056090578
LinkDB
All DBs
Position
Unknown
AA seq
771 aa
AA seq
DB search
MADRRRRRRRASQDSEEEDESASGSESGRSSSASRKPRGRDPEPVEVPVERVATKRDDES
ECESEDGVGEAVLSDYDSADLEENGSHTEGGEDEEEGEHFSDDEASRPAAEPKPAADAPT
EELVEAEERDEEVKEVKTDEKENLAGERQSGDGQESTEDPENKSGSQGQKLDDDEDRKNP
AYIPRKGLFFEHDVRGQATEEERPKGRHRKLWKDEGRWEHDKFREEEQAPKSREELIALY
GYDIRNGSGQSDGRSYRSRKPRYAGSPSREPRRHRDGEKSLRTTWQGPPPGHRNSPQSVT
LQSGPPPAPPAAPKPSGRPSTQPPQRSFQGSRASSAPHRTEGRGYPKPSLDGPPPRGVRP
QPVEGERGPRLRGRGSHAVHADRSPAVVVEDIRSEEEEEEGEIPTATTTYTAHHYKTERE
RLPSPRKQDPGPVMDGGSAAGQVRESSPPQERPVEKKSYSLGRRATRTRPSDLSKQASLD
DSSPTVQQTPAPAKSESWQEQSEAGTQGGLTGLDQDLARLSLGGQNWAQSPPSYLQAEMR
GIRGSMHMAGGPPQYGNMEDLGVGGGRAKRYSSQRQRPVPEPAPMHIGVMEGHYYEPMSF
QGPIYAHGDSPAALPPQGMLVQPEMHLPHPTHPGHPGLHPHQSGGPIPNPALYAAPPVSM
SPGQPPPQQLLPPPFYPPPGVMTFGNTNYPYPAGATLPPMYPNPQAQSQVYGGVTYYDTM
QQQAQPKRSPPRRSSHPVTVRPPPPEVTAYYIQQGELNQDQSRNPAEEIHS
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcgacggagacggcgcgcctctcaggacagcgaggaggaggacgag
tccgcctcgggctccgagagcgggagatcttcctcggccagccggaagcctcgcggaaga
gatcccgagcctgtcgaagtgccagtggagcgcgtcgccaccaaaagagacgatgagtcg
gagtgtgaaagtgaagatggcgttggtgaagcagtgctatcagactatgacagtgctgat
ctggaggagaatggatcgcacacggagggaggagaggatgaggaggaaggagagcatttt
agtgacgacgaagcctcacgtcctgctgctgaaccgaagcccgctgcagatgccccgaca
gaagagcttgttgaagcggaggagagagatgaagaggtcaaggaagttaaaacagatgag
aaggagaatctagccggggagcgacagagtggggatggacaggaaagcacagaggaccct
gagaataaatcaggaagtcaaggccagaagctggatgatgatgaggaccggaagaatcca
gcttacatcccccgaaaaggccttttctttgagcatgacgtgagaggccaggctacagag
gaggagaggcctaaaggcagacacaggaagttgtggaaggacgagggccgatgggaacac
gacaagttccgtgaagaggagcaggcgccaaaatcccgcgaagagcttatcgctctttac
ggttatgacatccgcaacggctcagggcagagtgatggacgatcgtaccgctcccgaaaa
cccagatatgctggttcacccagtcgggagcctaggcgccaccgtgacggagagaagtct
ttgcgtacaacatggcaggggcctccacctggccaccgcaatagccctcagtctgttacc
ctacagtcaggtccacctcctgctccccctgcagcacccaaaccctccgggcgaccctcg
actcaacctccgcagcgcagcttccagggcagtcgagcctcgtcggccccccacaggaca
gagggtcgaggatacccgaagcccagtctagacggcccgccacctcgaggtgtgcggcca
cagcctgtggagggtgaaaggggtccgaggctcagaggccgtggctcacatgctgttcat
gctgaccgtagcccagccgtggtggtggaggacatccgcagtgaggaagaggaggaagag
ggtgagattccaacagccacaactacatacaccgctcaccactacaagacagagagagaa
aggcttccgtcaccacgaaagcaagatccaggcccagtgatggacgggggcagtgcagcc
ggtcaggtgcgagaatcgtctccgcctcaggagaggccggtggaaaagaaatcgtactcg
cttgggcggagggctacgcgaactcgaccgtctgatctcagtaagcaggcgtcgttagat
gactcttcgcccacggtccagcaaaccccagcgccagctaagagcgagtcgtggcaagag
caaagtgaagcaggaacacaaggtggactaacagggctcgaccaggacctggctcgcctt
agtctgggagggcagaactgggcccagagcccaccctcctacctgcaggctgagatgaga
ggcatccgtggttcgatgcacatggcaggaggccctccacagtacggaaacatggaggat
ctaggtgttggtggaggccgggctaagcggtattcatcacagcgccagaggccagttcct
gagcctgcgcccatgcacataggagtcatggagggccattattatgaacccatgtctttc
cagggaccaatctatgcgcatggggacagtccagcagccctgccccctcaaggcatgctt
gttcaacctgaaatgcacctaccacaccccacccaccctggacacccaggcttgcatcca
caccagtcgggagggcccattcccaacccggctctttatgctgccccacccgtttctatg
tcacctgggcaaccgcctccacagcagctgctacccccacccttctaccctccaccaggt
gtcatgacctttgggaacaccaactacccatacccagccggagctacgctacctccaatg
taccccaacccccaggcacagtcacaggtctacggtggtgtgacgtactacgacacgatg
cagcagcaagctcaacccaaacgctccccgccgcgacgttcctctcatcctgttacagtc
agacctccccctcctgaggtaacggcatattacattcagcaaggagagctcaatcaggac
cagagcagaaatcccgctgaggaaatccactcctag
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