Rhinichthys klamathensis goyatoka (western speckled dace): 130070543
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Entry
130070543 CDS
T09701
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130070543 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rkg03021
]
130070543 (smarcd1)
03036 Chromosome and associated proteins [BR:
rkg03036
]
130070543 (smarcd1)
Transcription machinery [BR:
rkg03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130070543 (smarcd1)
Chromosome and associated proteins [BR:
rkg03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
130070543 (smarcd1)
PBAF complex
130070543 (smarcd1)
GBAF(ncBAF) complex
130070543 (smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIB
SWIB_eIF2D
Motif
Other DBs
NCBI-GeneID:
130070543
NCBI-ProteinID:
XP_056090940
LinkDB
All DBs
Position
Unknown
AA seq
510 aa
AA seq
DB search
MAARSGFQPATPGGGGAPLGPGPPVAGAGPGMGPGTPSGRMGPGGPQNHMYRSPMPGYPR
PGMPPASRMTPQGPSMGPPGYGASPVSRPGMPVMDPSRKRPAPNQIQQVQQQNRNQHAKK
KKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIF
ISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDTAVSKYEATKQKRKFSSFFKSLVIELD
KDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVGVRCTVLLMLDYQPPQFKLDPRLARLL
GIHTQTRPVIIQALWQYVKTHKLQDPHEREFINCDKYLQQIFETQRMKFSEIPQRLHALL
MPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAGLDNKIH
ETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQP
WAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgtagtggttttcagcctgcgacacccggaggcggcggagccccgttagga
cccgggccgccagtagccggtgcggggcccggtatgggtcccggtacgccctcaggacgg
atgggacccggcggcccgcagaaccatatgtatcgatcaccgatgcccggatacccgaga
ccaggaatgcctccagccagccgtatgacccctcagggaccctccatggggcctccaggt
tacggggccagtcctgtgtcccgccccggcatgccagtcatggacccgtcccgcaagcga
ccggcgccaaatcagatccagcaggtccagcaacagaatcgcaaccaacatgccaagaag
aagaaaatggcagataaaatcctacctcaaagaatcagagaacttgttcctgagtctcag
gcgtacatggacctgctggcgtttgagaggaagctcgaccagaccatcatgcgcaagcga
ctcgatattcaagaagctctcaagagacccatcaagcaaaaaagaaaactacggatattt
atctccaacaccttcaatcctgccaaaccggatgcagaggacggcgagggtaccgttgca
tcttgggagctgcgtgtggagggacgacttcttgaagacactgctgtgtccaaatatgaa
gccaccaagcagaagaggaagttttcttcttttttcaagtctttagtgatcgagttggat
aaagacttatatggacctgacaatcatttggtggagtggcaccgaacagccacgactcag
gagaccgacggatttcaggtgaagaggcccggagatgttggggtccgctgtactgtactg
ctcatgctggactaccagccccctcagtttaagttggaccccaggctggcccggttgctg
gggatccacactcagacccgacccgtgatcattcaggctctgtggcagtacgtgaagacc
cacaaactccaggaccctcatgaacgagagttcatcaactgtgacaaatacctccagcag
atctttgaaacccagaggatgaagttctctgagatccctcagcggctgcatgcactactg
atgccccccgagccaatcatcatcaaccacgtcataagcgtggatcccaacgaccagaag
aagacggcgtgctacgatatagacgtggaggtggacgacaccctgaagacccagatgaat
tctttcctgctgtccactgccagtcagcaggagatcgcaggcctcgacaacaagatccat
gagacgatcgaaactattaaccagctgaagactcaaagggagttcatgttgagcttcgca
cgagacccgcagggcttcatcaatgactggctccagtcgcagtgcagagacttgaagacg
atgacggatgtggtaggaaacccggaggaggagaggagagcagagttctacttccagcct
tgggctcaagaggccgtgtgccgttatttctattcaaaggttcagcaaaggagacaggag
ctggaacaggctcttggcattcgaaacacataa
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