Rhinichthys klamathensis goyatoka (western speckled dace): 130070666
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Entry
130070666 CDS
T09701
Symbol
dicer1
Name
(RefSeq) endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rkg03036
]
130070666 (dicer1)
Chromosome and associated proteins [BR:
rkg03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
130070666 (dicer1)
microRNA pathway
RISC loading complex
130070666 (dicer1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Dicer_PBD
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
130070666
NCBI-ProteinID:
XP_056091124
LinkDB
All DBs
Position
Unknown
AA seq
1883 aa
AA seq
DB search
MAGLQLVTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGK
TFIAVLLIKELSHQIRGEDEKRTVFLVNAASSVVQQASTVRTHSDLQVADYMSEEMTSWP
EGMWNRKIMGNQVLVMTCHIFLHVLKNGVLPLSKINLLVFDECHLAITDHPYQEIMKICE
GCPGCPRILGLTASILNGKCDPCDLEEKIQNLEKILQSNAETATDLVVLDRYASQPREVV
LDCGLYQDQSGLSKRLLSELDEALHFLNDCNLFTHREDRDPTFISKQVLNDCRAVLTVLG
PWCADKAAGIMVRELQKYIKHEQEDLNRKFLLFTDTILRKIHALCEEHFSPASLDMKFVT
PKVIRLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEAEAKEKPEANF
PSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPRNKQM
EVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRAR
APVSNYIMLADNERTKTFEEDLKTYKAIEKILRNKCSKSAECNDFELDSVTDDDNVLPPY
VLRSEDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTVELKTGGYRSTLFLPINSP
LRVPVTGPTMNCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEET
NVPGRPGSTKRRQCYPKAIPECLRGCYPVPEQPCYLYVVGMVLTTPLPDELNFRRRKLYP
PEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFALSAAQLELITRLHQYIF
SHILRLEKPALEFKPVEADSAYCVLPLNIVEDSNTLDLDFKFMEDIEKSEARIGIPNTQY
TKQNPFIFRLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKT
KYNLDLSNVNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILV
PELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRSQTAIDAGVGAKTLPPDFRYPNL
DFGWKKSIDSKSFISCPSACMEEDDHCKHGTSSDSDHTAEESCNMEASQPPEGALPCEYC
NTPDEKLETHMLPVTEVQTLNKDKSDCVCSRNLPNSTRCDSDDLPHRHDICQCSQLGSLE
SDLSTQTTTSVPVRPSLAGEPQPQPQPSDECTPGSNSDLCDRHVKKPTSNCCPKPEMATS
TTAPLEVSSEVSDVTSTTSCTGPAWDSPKTLGPNPGLILQALTLSNASDGFNLERLEMLG
DSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVN
WLPPGYVVNQDKSSMDKWDSDENKDLANGKASDEEEDDDDEAEDVEVEESKEEVNVEDDL
EYYYEHIRFIDNMLIGSGAFGKKISLQPAEPGHEWKAPKKPHNSHFSPDTGADEFDYSSW
DAMCYLDPSKAGEEDDFVVGFWNPSEENCGTDIGKQSISYDLHTEQCIADKSIADCVEAL
LGCYLTSCGERAAQLFLCSLGLKVLPPEKQSSGGSAELQYGWLKIPPRCMFDHPDAERTL
NHLISGFENFEKKINYTFQNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKH
LYEDTRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEK
NEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMR
PLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRI
AKSAAARRALRSLKANQPQVQTN
NT seq
5652 nt
NT seq
+upstream
nt +downstream
nt
atggctggcctacagctggtgacccctgcctcctcacccatggggcccttcttcggtctc
ccgtggcaacaggaagctatccatgacaacatatacacaccaagaaaatatcaggttgaa
cttcttgaagcagctcttgaacacaatactatagtctgcttaaatactggctcagggaag
acctttatcgcagtgctcctaatcaaagaactctcccaccaaatccgtggagaggatgaa
aagagaacggttttccttgtgaatgcggcatcatctgtggttcagcaagcatctactgta
agaacccactcggatctccaggtagccgactacatgtcagaggaaatgacatcatggcct
gaggggatgtggaacagaaagattatggggaatcaggtgctggtgatgacgtgccacatc
ttcctgcatgtgttaaagaatggagtcttgccactatcaaaaatcaacctgctggttttt
gacgaatgccaccttgcaatcacggaccatccttatcaggaaataatgaagatttgtgag
ggttgcccaggctgtcctcgcattttgggtctgactgcttccattttaaatggcaaatgt
gacccttgtgatctggaggagaagattcagaacctggagaagattttgcagagcaatgca
gaaactgccaccgatcttgtggtgctggataggtatgcgtcccagcctcgtgaggtggtg
ctggactgtgggctgtaccaggatcagagtgggctctctaagaggcttttgagcgagttg
gatgaagcccttcattttcttaatgactgcaacttattcactcatcgagaagatagagac
cccaccttcatctccaaacaggtgctgaatgactgtcgtgctgtgttgactgtgctgggc
ccttggtgcgcagataaagctgcgggaatcatggtccgggagcttcagaaatatatcaaa
catgaacaggaagacctgaaccgcaagttcctgttgttcacggacaccattctgagaaaa
atccacgccttatgtgaggagcatttctctccagcttccctagacatgaagtttgtcact
cccaaagtcatcagacttctggagattctccacgagtacaaaccttttgaacggcagcag
tttgagagtgtggagtggtacaacaatcgcaatcaggacaattacgtttcttggagcgat
tctgaggacgaagacgaggatgaagaggcggaggcaaaggagaagcccgaagcaaatttt
ccctcgcctttcaccaacatcctctgtggaatcatctttgtggaaaggcgatatacagcg
gttgttttaaacagacttattaaggaagcagggaagcaggacccagagctggcgtacatt
agtagcaacttcatcacaggtcacagcatcggcaagaaccagcctcgcaacaaacaaatg
gaggtggagttcagaaaacaagaggaggtcctgaggaagttcagagcccatgaaaccaac
ttgctcattgcaaccagcattgtggaagaaggtgttgatattccaaagtgcaatttggtg
gttcggtttgacctgccgacagagtaccggtcgtacgtgcaatccaaaggtcgtgcccgt
gctccagtctccaattacatcatgttagctgacaacgaacggacaaaaacgtttgaagaa
gatctcaagacctacaaggccatagaaaagatcctccgaaataagtgctcaaagtcagca
gaatgcaatgattttgaactggattcggtgaccgatgatgacaacgttctcccaccttac
gtcctgcgctcagaggacggaggcccccgcgtcacgattaacacagccattgggcacatc
aacagatattgtgcgcgtttgcccagtgatccgttcactcatcttgctccgaagtgtaaa
actgtggagttgaagactggaggttatcgatccacactctttctacccatcaactcacca
ctcagagttcctgtcactgggccaacgatgaattgtgcaagacttgcagagaaagctgtc
gctcttctctgttgtgaaaaactgcacaaaattggtgaactggatgatcatttgatgccg
gtgggaaaggaaactgtaaaatatgaggaggagctggacttgcatgatgaggaagagaca
aacgtgccaggaagaccaggctccaccaaacggagacagtgttacccaaaagccatacca
gagtgtctgcggggctgttaccctgtgccagagcagccttgttacctttacgtcgtaggg
atggtcctcaccacccctcttcctgatgagcttaacttccggcggaggaagctgtatccg
ccagaggacactacccgatgttttggcattctaacagctaaaccaatacctcggatccct
cacttccctgtgtacacacgttctggtgaggtgaccatctcgattgagctgcagaagtcg
ggcttcgctctgagcgcagcgcagctggagctgatcacgcgtctccaccagtacatcttc
tcccacatcctccgtctggaaaagccagcactagagtttaagcctgtcgaggcagattct
gcctactgcgttctacctctcaacattgttgaggattccaataccttggacttggatttc
aagttcatggaggatattgaaaagtctgaagcacgcattggcattccaaacactcagtac
accaagcaaaacccattcattttcagattggaggactaccaggatgctgtcatcattccg
aggtatcgtaattttgaccagccacatcggttctatgtggctgacgtttacacagacctc
accccgctcagtaaattcccctctccagagtatgagactttcgctgagtactacaaaacc
aagtacaacctggacctgtctaatgttaaccagcctctactggatgtggaccacacatct
tcaagattgaatcttttaactcctcggcaccttaatcaaaaggggaaagcccttcctctc
agcagtgcggagaagagaaaggccaagtgggaaagcctacaaaacaaacagattttagtt
ccggagctctgtgccattcaccccatcccagcctctttgtggaggaaagctgtctgcctt
cccagcattctctacagacttcactgccttctgacggccgaagaactgcggtctcagaca
gccattgacgctggcgtaggggctaagaccctgcctcctgatttcaggtatcctaatttg
gatttcggatggaagaaatccatcgacagcaaatctttcatttcctgccccagtgcatgt
atggaagaggacgatcactgtaaacacggcacaagctcagattcagaccacactgccgag
gagagctgcaatatggaggcctcccagcctccagagggcgctctcccctgtgagtactgc
aacacaccagatgaaaagctagaaacccacatgctccctgtgactgaagtccagacgctg
aacaaagacaagagcgactgcgtctgttcccgaaacctccctaacagcactcggtgtgac
agcgacgacctcccacacagacatgacatttgccaatgctctcagctgggctctctggag
agtgacctatcaactcaaaccactacctcagttcctgtgcggccctctctagccggcgag
ccacagccccagccccagcccagcgatgaatgtaccccaggcagtaactcagatctctgc
gacagacatgtgaaaaaacctacctcaaactgttgccccaaaccagagatggcaaccagc
accacagcacctttagaagtgtcatcagaggtctctgacgtgacctctacaacatcctgc
acaggtccagcctgggattctccgaaaaccttgggccccaaccccggcctcatcttgcag
gccctgaccctctccaatgccagtgatggcttcaatctggagaggttggagatgctgggt
gactctttcctgaaacacgccatcaccacctacttgttctgcacttatcctgatgcccat
gagggcaggttgtcatacatgagaagcaagaaggtcagcaactgtaacctttatcgcttg
gggaagaaaaagggccttcctagtagaatggtggtatccatctttgatcccccggtaaac
tggcttcctccgggctacgttgtgaatcaggacaaaagcagcatggacaagtgggactca
gatgagaataaagatttggccaacggaaaagccagtgatgaggaggaggatgacgacgat
gaagcagaggatgtggaggtcgaggagtctaaagaagaggtcaatgtggaagatgatctg
gagtactactacgagcacatcagattcatcgataacatgctgattggctccggcgccttc
gggaagaagatctccctccagccggctgagcctggccacgaatggaaagcacccaaaaaa
cctcacaactcccacttttccccagacactggcgctgacgagtttgactacagttcctgg
gatgccatgtgctacctggaccccagcaaagctggcgaggaggatgactttgtggtgggc
ttctggaacccttccgaggaaaactgtggcacggatattgggaaacagtccatctcctac
gacctccacaccgagcaatgcatcgctgataagagcatagccgactgtgtggaggccctg
ctggggtgctacctcaccagctgtggggagagggcagcccagctgtttctgtgctccctc
ggcttgaaggtgctcccgccggagaagcagagttcaggggggtcggccgagctgcagtac
ggctggctgaagatccctccgcgctgcatgttcgaccacccggatgccgagcggacccta
aaccacctcatttcaggcttcgagaactttgagaagaagataaactacacgtttcaaaac
aaggcatatcttctgcaggccttcacgcacgcctcgtatcattacaacacaataacagat
tgttatcagcggttggagtttcttggtgatgcaattttagactacctcataacaaagcac
ctttatgaagatacccggcagcactctccaggcgtgctgaccgacctgcgctctgcactt
gtcaacaacaccatatttgcttccctggctgtcaagtacgattaccacaagtacttcaaa
gctgtctcacccgaactgttccacgtgatcgatgattttgtgcaatttcagctggagaag
aatgaaatgcaaggaatggattcggagcttcgccgatcggaggaagatgaggagaaggag
gaagacattgaggtccccaaagcaatgggagacatctttgaatcgctagctggtgcaatt
tacatggatagcgggatgtcacttgagacagtttggcaagtgtattatccaatgatgagg
ccgctcatagaaaaattctccgctaatgtccctcgatccccagtgcgtgaactcctggag
atggaaccggagactgctaagttcagccctgcggagagaacctacgatggaaaagtaagg
gtgacagtggaagtggtgggcaaaggcaagttcaaaggcgtgggacgcagctaccggata
gccaagtcagcggccgcccgccgagccctgcgcagtctcaaagccaatcaacctcaggtc
caaaccaactga
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integrated database retrieval system
