Rhinichthys klamathensis goyatoka (western speckled dace): 130071168
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Entry
130071168 CDS
T09701
Symbol
sox5
Name
(RefSeq) transcription factor SOX-5 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rkg03000
]
130071168 (sox5)
Transcription factors [BR:
rkg03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
130071168 (sox5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
130071168
NCBI-ProteinID:
XP_056091785
LinkDB
All DBs
Position
Unknown
AA seq
764 aa
AA seq
DB search
MLTEPELPQEFNRMSSKRPASPYGGTDGEVVMATSRQRLEDEEVDGHAVIHLPLSSYCSK
VSPRSPRLLDSPPTLHANMDQDGCKGLALSPYPQHNSSTSPSKQQHQQQEEGSMRPGSEP
SSASALGTPERRKGSLADVVDTLKQRKMEELIKNEPEEAPSIERLLSKDWKDKLLAMGSG
NFGEIKGTPDSLAEKERQLMGMITQLSSLREQLLAAHEEQKKLAASQIEKQRQQMELAKQ
QQDQIARQQQQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAAAAAQQGFLLP
PGFNYKPGCSDPYPLQLIPTTMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGAKHSTVP
QANLATGTHSPTSGQSEKNRSTPPPKPKDEGAQPLNLSSKPKASESKSPTSPASPQVPTL
KLGPGSLKHSAHSSIGGPPSRLSSIDLLSSITSGGYLNDHEAVTKAFQEARQMKEQLKRE
QQVLDAKVAAVNSLSLNNGRSEKDKAALESLSQHLKQSEESKFTHAMMDFGISGDSDGSP
SVSDSRIFREARGRGGSSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRW
KAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQ
EMRQYFTVGQQTQLPLSSAGVVYPGALSMAGMPSPQLPSEHSSMSSSPEPVPPTSQPSYR
THKGEGPRVKEEELRMDDGNGDAYDDFDYEDDDYGSDSENHITQ
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgcttactgagcctgagcttcctcaggagtttaacaggatgtcttccaagcgaccagcc
tctccatatgggggaacagatggagaggtagtcatggcgacaagcagacagcgattggag
gatgaagaggttgacggacatgctgtcattcacttgcccctgagttcgtactgcagcaaa
gtgtccccgcgatctcctcgactactcgacagccccccaacactacacgcgaacatggat
caggatggctgtaaaggcctggccctgagcccctacccccagcacaactcgtctacctca
cccagtaagcagcagcatcagcagcaggaggaggggtccatgcggccgggcagcgaaccc
agctccgcttcagctctgggcaccccagagagacgcaagggcagcctggccgatgtggtc
gacacgctcaaacagcgcaagatggaggaactcatcaagaatgagccagaagaggccccc
agtattgaaaggctgttgtctaaggactggaaggacaagctattggccatgggttctggc
aactttggggagatcaaaggcaccccggacagcctggcggagaaagagcgccagctgatg
gggatgatcacgcagctcagcagtctcagagagcagctactggccgcccatgaggagcag
aagaaactagccgcttcgcaaattgaaaaacagcgccagcaaatggagttggcgaaacag
caacaggaccagattgcacgacaacagcagcaacttctgcagcaacaacacaaaatcaac
ctcctgcagcaacagatccagcaggtccagggtcagttgcctccgctgatgatacctgtg
tttcctccagatcagagaactctggcggccgctgcagcacaacaaggatttctacttcct
ccagggttcaactacaaaccgggctgcagtgacccttaccctctacagctgatccccaca
actatggcagccgctgctgcggcaacgcctggcctcggccctcttcagctgcagcagttg
tatgcagctcagttagctgccatgcaggtgtctccgggggccaaacacagcacagtgcct
caggccaacctggcaaccggaacacactcgcccaccagcggccagagcgagaaaaacaga
agcaccccaccaccaaagcccaaggacgagggcgctcagcccttgaatctgtcgtccaag
cctaaggcatccgagagcaagtcacccacctcccccgcttccccacaggtccccaccctg
aagctgggccccgggtccctgaagcacagcgcccactccagcatcggaggaccgccgtcc
agactcagctccatagacctgctgtcgtctatcacctccggcggctacctgaacgaccat
gaggccgtgaccaaagctttccaggaggccagacagatgaaggagcagctaaagagagag
cagcaggtgctggacgccaaagtagcggcagtcaacagcctgagcctcaacaatggacgc
tcagaaaaggataaagctgctcttgagagcctaagccagcatttaaaacagtctgaagag
agcaagttcactcacgcaatgatggactttggcatcagtggagattcagatggaagcccg
agtgtgtcggactcccggatcttcagggaggctcgagggcgtggcggcagcagcgaaccg
cacatcaagaggcccatgaacgcctttatggtctgggctaaagacgagaggaggaagatc
cttcaggccttccctgacatgcataactcaaacatcagcaagattctcggttctcgttgg
aaggccatgaccaacctggaaaagcagccatactatgaagaacaggcccgtcttagtaag
cagcacctagagaaatacccagactacaaatacaaaccacggcccaaacgcacctgcctg
gtggatggaaagaaattgcgcattggtgaatataaggccatcatgcgcaaccgcagacag
gagatgcgccagtacttcaccgtagggcagcagacccagttacccttgtcctcagcgggc
gtagtgtacccgggtgcgctctctatggcgggaatgccctctccacagttgccctctgag
cactcgagcatgtcaagtagccccgaaccagtcccgcccaccagccagccctcataccgc
acacacaaaggggaggggcctcgtgtgaaggaggaggagctccgaatggatgacggcaac
ggcgacgcctacgatgactttgactacgaagacgatgactatggcagtgacagtgagaat
cacatcactcagtaa
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