Rhinichthys klamathensis goyatoka (western speckled dace): 130071198
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Entry
130071198 CDS
T09701
Symbol
dhx58
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
130071198 (dhx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
rkg04054
]
130071198 (dhx58)
Enzymes [BR:
rkg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130071198 (dhx58)
Pattern recognition receptors [BR:
rkg04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
130071198 (dhx58)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
cobW
Motif
Other DBs
NCBI-GeneID:
130071198
NCBI-ProteinID:
XP_056091848
LinkDB
All DBs
Position
Unknown
AA seq
679 aa
AA seq
DB search
MEITLRSYQEEVVQTALKGENSIIWLPTGGGKTRAAVYVAKKHLETTANAKVAVLVNKVH
LVDQHFDKEFNLYLGKPYKIKAISGDSGDKDLFGCLVKDSDLVICTAQILENALNSTEEE
KHVDLTDFTLLVIDECHHTQKESVYNKIMGRYVEKKVRKEGKLPQVLGLTASPGTGGNKS
LDKAVEHVLQICANLDSVIVSTKDYTPALKEVVPKPKKQYDIVEKRALDPFGDHLKLMMS
MIHEFMPSTVSRSLRDMGTQEYEADVVELEKTGVIEENRLIAQCALHLRQYNDALLINDT
VRMVDAFNVLDEFYNSRKNKLLDGTDFFLQGLFDENRVELKQLASDARYENPKLAQLQLT
LLEEFRDKTSRGIIFSKTRRGTHCLYDWVNSNHELLKVKITAGILTGTGTGADHMNQSVQ
KKTIKDFRQGFHNLLISTSVAEEGLDIPECNLVVRYGLLTNEIAQQQASGRARAENSVYS
VVAEEGGRELRREFTNEYLESLTSKAIDQVQRMSPREFRVKISKLQQMSILIRIEAEKKK
DERKQRYSPAQVQLQCRGCFLRVCSGEDIKKIENSHHVNINPEFKRHYRTGGQVILERTF
EDWEPGRVISCSKCGQEWGLEIKFKMVAILPCLKIKNFFLNTPQGKVSCKYWKNVEFQVT
EFDFIDYMSSCFPDLDFDD
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggagatcactcttagatcataccaggaggaagtggtgcagacggctctaaagggggag
aacagcatcatctggctgcccactggtggaggaaaaacccgtgctgctgtttatgttgcc
aagaaacacctggagactacagccaatgccaaagtggcagtgctcgtcaacaaggtgcac
ctggtagaccagcactttgacaaagaattcaacctttatcttgggaagccatacaagata
aaggccatcagtggggacagcggtgacaaggacttatttgggtgtctggtcaaggactca
gacctggtcatctgcacggctcagattttggagaacgccctgaatagcacggaggaggaa
aaacacgtggatctcacagacttcaccctgttggtcatagatgaatgtcaccacacgcaa
aaggaaagtgtctataacaagattatgggccgctatgtggagaagaaagtgagaaaagaa
gggaagctgccccaggttttgggcctcacagcatcacctggtacaggaggaaataagtca
ctggataaagctgtggaacatgtcttgcagatctgtgccaatctggattcagtaattgtg
tccaccaaggattatacaccagcgctcaaggaagttgtccctaaacccaaaaagcaatat
gacattgttgaaaaaagagctctggatccatttggcgaccacttgaagttaatgatgtca
atgattcatgagttcatgccatcaacggtgagccgtagcctgcgggatatgggcacacag
gaatatgaagctgatgtggtggaactagagaaaacaggtgtaatagaagagaacagactg
atcgctcagtgtgcactgcatctgcggcaatacaacgatgctcttctcattaacgacacc
gttcgcatggtggacgcgttcaatgttctggacgagttctacaattcaaggaaaaacaaa
ttgctggatggaacagacttctttctccagggactttttgatgagaaccgcgtggagcta
aaacaactggcatcggatgcccgctacgaaaaccccaaactggcccagttgcaactcacg
ctgctggaagagtttagagataaaacgtctcgcggtataatcttctcgaagacgcgcagg
ggcacacattgtctgtatgactgggtgaactccaaccatgagctgctgaaggtcaaaatc
actgctggcattctcactggaacgggtactggtgccgaccacatgaaccagagtgtacag
aagaagaccatcaaagattttagacaaggattccacaacctcctcatctctaccagtgtg
gctgaggaaggacttgatattccagaatgcaacttagttgtacgttacggcctgttgacc
aatgagatcgctcagcagcaggccagtgggcgggctcgagctgagaacagcgtctactca
gtggtggctgaagaaggtgggcgcgaactgcgcagggaatttaccaatgagtatctagaa
agtctgacctcaaaagctattgaccaagtacagagaatgagtcccagggagttcagagtc
aagatatctaaactccaacaaatgtctattctgattcggattgaagctgagaagaaaaag
gatgagaggaagcagcgctacagtcctgctcaggttcagcttcaatgcagaggatgtttc
cttcgtgtctgcagtggagaagatatcaaaaagatagagaattcacaccatgtcaatatc
aaccctgagtttaagaggcattatagaactggtgggcaagtgattctggagaggactttt
gaagattgggagcctggacgggttatcagctgcagtaaatgtggacaggaatggggattg
gagattaaattcaagatggtggcgatactcccctgtttgaaaataaagaactttttcttg
aatactcctcaaggcaaagtctcttgcaagtactggaagaatgttgagttccaggtgaca
gagtttgacttcattgactacatgagcagctgtttccctgacctggactttgatgactga
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