KEGG   Rhinichthys klamathensis goyatoka (western speckled dace): 130071768
Entry
130071768         CDS       T09701                                 
Symbol
kdm5bb
Name
(RefSeq) lysine-specific demethylase 5B-B isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
rkg  Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:rkg00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:rkg01009]
    130071768 (kdm5bb)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rkg03036]
    130071768 (kdm5bb)
Enzymes [BR:rkg01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     130071768 (kdm5bb)
Protein phosphatases and associated proteins [BR:rkg01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     130071768 (kdm5bb)
Chromosome and associated proteins [BR:rkg03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    130071768 (kdm5bb)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel PHD ARID zf-C5HC2 JmjN PHDvar_NSD PHD_5 zf-PHD-like
Other DBs
NCBI-GeneID: 130071768
NCBI-ProteinID: XP_056092609
LinkDB
Position
Unknown
AA seq 1572 aa
MYVRACVDCSCCSSVSRTRGVTDGQTLLRIPGSSVPASLSDSILLRNRTCRMTQRGPAEF
TPPPECPVFEPSWEEFADPFAFINKIRPIAEKTGICKVRPPPDWQPPFACDVDRLHFTPR
IQRLNELEAQTRVKLNFLDQIAKFWELQGCTLKIPHVERKILDLYQLNKLVADEGGFDLV
CRERRWTKIAMTMGFAPGKAVGSHLRAHYERVLYPYNLFQSGTNLLAPEIAAKLSSFRAP
PGMEECLQKTSVDDVNDKDKEYKPHDLLQRQNIHVQPNDTSAPARRAKRMKTESGCVKSE
EAEGCENRPNLRRRMGSFVAKPEPEREIPIQVKQEPEEINELSPEPEKSKSRYKKNILPP
PVSVVDLYVCLVCGKGNDEDRLLLCDGCDDSYHTFCLIPPLSEVPKGDWRCPKCLARECC
KPQEAFGFEQAYRDYSLKSFGEMADSFKSDYFNMPVHMVPTELVEKEFWRLVGTIEEDVT
VEYGADIASKEFGSGFPIKGGKFKVAPHDEKYLNCGWNLNNMAMMTPSVLTHVTADICGM
TLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGAPGFAAEQLEAVMKKLAPELF
ESQPDLLHQLVTIMNPNTLMAHGVPIYRTNQCAGEFVITFPRSYHSGFNQGFNFAEAVNF
CTVDWMPLGRQCVDHYRLLHRYCVFSHDEMVCNMATKADNLDVVLASAVQKDMRLMIREE
RELRDKVRKMGVVQCELFEYDLLADDERQCVKCRTTCYLTALTCPCRPGVQVCLHHAYDL
CSCPVSNYTLNYRYTLDDLYPMMNAVRQRAESYDEWASKVTEIMEAKLDKKRNVTVFRTL
LEESDEKSFPENDLLRQLKLVTQDAEKCSSVAQQLLNGKRQTRYRTGGGKSPNQLTVEEM
RSFVRQLYNLPCSLTQAPLLKELLNSIEDFQQHSEKLLSDEVSADVVSEIESLLEEGSQF
DVFLPELPLLRERLEQARWLARIEQAEDPVSNPCGLSLDSMRRLIDRGVGLTQHPSTERT
MARLQELLTISEELEEKAQALLKARPPESLETIGSMLTQVDGVPAYLPNCLLLQDTLNRA
KEWLQEAEDLQVAGQSPVLSSLSDMVLRAHAIPVRLEPLDQLEVLVSEVQAWKESATKTF
LVKNSPFTLLEVVCPRWEVGSSLKKKMRKVKGECVSSGKKKLVKLDSVSDVERALSDSKD
SASAMFTLAEVRLKELESLCSLRAANESKLLPTADCSALKVCVCQKPAMGAMLQCELCRD
AFHSVCVRGPSDPLDPEAWLCPLCLRSTKPPMDKILTLLSSLQRIRVRFPEGDALRYMIE
RTGSWQRRAREVIDSYDLSPTSQDCRVASPTKSHRNNRKQLCGSPSQSQDWHVSGQEQTV
FYTEQRCIPLQGLSSELEELMVEGLLLQVSVPETQQLYRLLLSGLPTTNTSHTEHTPYLT
QKHSSPQRERDAITSAEKKAKRRMNREDTEIRDRGIKPKSKKQRMGTEKRRERKAASVSA
SDVSQSEDSEEDMTLCPAESCLQPEGEEVYWVQCDCCNRWFHMICVGVSAELAAEEDYMC
VTCNTTNAGRRK
NT seq 4719 nt   +upstreamnt  +downstreamnt
atgtatgtgcgcgcgtgtgttgattgttcgtgttgttcaagtgttagccggactagggga
gtaacggacggacagaccttgttgcggatcccaggaagttctgtccccgcttcgctgagc
gactcgattctgctccggaaccggacctgcaggatgacccagcggggcccggctgagttt
accccaccgcccgagtgcccggtattcgagcccagttgggaggaatttgcagacccgttt
gcctttatcaataaaatccgacccatcgccgagaaaacggggatctgcaaggttcgaccg
ccgccggactggcagcctccatttgcatgtgacgttgacagacttcattttactccacgg
atccagagactcaacgagttagaggctcaaaccagagttaaactcaacttcttggaccag
attgctaagttttgggaactacaaggatgcacgctcaaaattccacatgtggagcggaag
atcctcgatctgtaccagctgaacaaattggttgcagatgagggtggattcgatttggtt
tgtagagagaggagatggacgaagattgccatgacgatgggttttgccccaggcaaagct
gtggggtcccacctgagagcccattatgagagggtcctgtatccgtacaatctcttccag
tctgggacaaaccttctggctcctgagatcgcagccaaactgtcaagttttagggcacct
cctgggatggaggagtgtctccagaagacttcagtggatgatgtaaatgacaaagataaa
gagtataaaccccacgacctgctgcagaggcaaaacattcatgtccagcccaacgacacg
agcgcacctgctagaagagccaagaggatgaaaacagagtctggctgtgttaagtcagaa
gaggctgagggatgtgagaacagacccaatctcaggaggaggatgggttccttcgttgcc
aagcctgaaccagagagggagatccctatacaggtgaagcaggaacctgaggagataaat
gagctgagtcctgaaccagaaaaaagcaaatcacgttacaagaaaaacatcctccctcct
ccagtgagcgtggtggacctgtatgtgtgtttagtgtgtggaaaggggaacgatgaggat
cgtttgttgctatgcgacggttgtgacgacagctaccacaccttctgcttgatcccgccc
ctcagtgaggttcctaaaggtgattggaggtgccctaagtgtctggctcgggagtgctgt
aaacctcaggaggcgtttggctttgagcaagcatacagggactattctctgaaatccttt
ggggaaatggcagactccttcaagtcagactatttcaacatgcctgttcatatggtaccc
accgaattggtagaaaaagagttttggagattggtcggcaccatcgaggaggatgtgaca
gtggaatatggtgctgatatagcctcaaaggagttcggaagcggttttccaatcaagggc
ggaaagtttaaggttgcaccgcatgatgagaaatatcttaattgtgggtggaacctgaat
aacatggccatgatgacaccgtcagtgctgacccatgtcactgctgatatctgtggcatg
actttgccgtggctctacgtgggcatgtgcttctcctctttctgctggcacattgaggac
cactggagctattcaatcaactacctgcactggggagaacctaagacctggtacggggct
cctggttttgccgctgagcagttggaggcagtcatgaagaaactggccccggaactgttt
gagtctcagccggatcttctacaccagctcgtcacaatcatgaaccccaatacactcatg
gcccatggagtaccaatttacagaaccaatcagtgtgctggagagtttgtcattactttt
ccgcgatcctatcacagcggcttcaaccagggtttcaactttgcagaggctgtgaacttt
tgcacagtggactggatgccactggggcgtcagtgtgtggatcactaccgcctgctgcac
cgttactgtgtgttctctcatgatgagatggtgtgtaatatggccacgaaggctgacaac
ctggacgtggttctggcgtcagccgtacagaaggacatgcggctcatgataagagaggag
agagagttacgggacaaagttcgtaagatgggggtggtccagtgtgagttgtttgaatat
gacttgctggcagatgatgagagacagtgcgtgaagtgtcgcaccacctgttacctcact
gctctcacctgcccctgcagaccaggagtccaggtgtgtctacaccatgcctacgacctc
tgctcctgccctgtctccaactacacactcaattaccgttacacactggatgacctttac
cccatgatgaacgctgtgcggcagagggcggagtcttatgacgagtgggcgtcaaaggtt
acagagatcatggaagcaaagctagacaagaaacgcaatgtcaccgtgtttcgcaccctt
ctagaggagtctgatgagaagtcgttcccagagaacgatctgttacgtcagctaaagcta
gtaactcaagatgctgagaaatgctcgtctgttgctcagcaactgctaaatggcaagagg
cagaccaggtatcgcacaggcgggggtaaatctcctaatcagctcactgtggaggaaatg
agatcatttgtccgccagctttataacctgccctgcagcctgacacaggcaccgcttctg
aaggaactgctgaatagcatagaggatttccagcaacacagtgagaagcttctctccgat
gaagtgagcgcagatgttgttagtgagatcgagtccttgctggaggagggctctcagttc
gacgtgtttcttccggagttgccgctgctacgggagcgtttggaacaggcacggtggctg
gccagaattgagcaggcagaggatccggtatcaaacccctgcggtctctctctggacagc
atgcgccggctgatcgatcgaggagtcggactgactcagcatccctccactgaacgcacg
atggctcggctgcaggaactgctcacgatctcagaggagttggaggagaaagcgcaggca
ctgctgaaagccaggcctccagagagtttagagacgatcggttccatgttgacgcaggtg
gacggggtacctgcatacctgccaaactgcctcctactacaagacacattgaacagggct
aaagaatggcttcaggaagctgaggatttacaggtggcaggtcagtctccagttctcagc
tcgctctctgatatggttctgagagctcatgctattcctgtgcgactggagcctctggac
cagcttgaggttctggtatcagaggtgcaggcctggaaagagtccgccacaaaaaccttc
ctcgtcaaaaactcccccttcacgctgttggaggtcgtgtgtccccgatgggaagtgggc
agctctttgaagaagaagatgaggaaggttaagggagagtgtgtgtcatcagggaagaag
aagctcgtgaagctggacagtgtgagtgatgtggagagagcactttcagacagcaaagac
tctgcatccgctatgtttactctggctgaggttcgtttaaaagagttggagtcgctatgc
tctctccgtgcagctaatgaatcgaagctcctgcctacagcggactgctctgctctcaaa
gtgtgtgtgtgtcagaagccagccatgggcgccatgctgcagtgtgagctgtgtcgagat
gctttccacagcgtgtgtgtacgtgggccctcggatcccctcgaccctgaagcctggctg
tgtccgttatgcctacggtcgactaagcctcctatggacaagatcctgacactgttgtca
tcactgcagcggatccgtgtgcgtttccctgagggtgacgctctacgttatatgattgaa
cgtactggcagctggcagcgacgggcacgagaggtcatagactcttatgatctctcgccg
acctctcaggattgcagagtagcttcacctacaaagagccacaggaacaacagaaagcag
ctgtgtggatctccatctcagagtcaggactggcatgtttctgggcaggaacagactgtg
ttttacacagagcaacgctgtatccctctccagggtctcagttcggagttggaggaactg
atggtggagggtttgctcctgcaggtttctgtccccgagacccagcagctttacagactt
ctgctgtccggcctcccgactacaaacacttcccacacagaacacacaccctacctcaca
cagaaacactcctcgccgcagagagagagagatgcaatcacttctgcagaaaagaaagcc
aagcggcgaatgaacagagaggatactgagatcagggatagagggataaagccgaaaagc
aagaagcagagaatgggtacggagaagcggagagagaggaaagcagcatctgtctctgca
tcagacgtgtctcagtcggaagactcggaggaggatatgaccctgtgtccggcagagagc
tgtctccagccggagggggaagaggtgtactgggtgcagtgtgactgttgtaaccgctgg
ttccatatgatatgtgtgggggtatcggcagaactcgcagccgaggaggattacatgtgc
gtgacctgcaacacaaccaatgcaggccgccggaagtga

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