Rhinichthys klamathensis goyatoka (western speckled dace): 130071789
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Entry
130071789 CDS
T09701
Symbol
pbrm1
Name
(RefSeq) protein polybromo-1 isoform X1
KO
K11757
protein polybromo-1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130071789 (pbrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rkg03021
]
130071789 (pbrm1)
03036 Chromosome and associated proteins [BR:
rkg03036
]
130071789 (pbrm1)
Transcription machinery [BR:
rkg03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130071789 (pbrm1)
Chromosome and associated proteins [BR:
rkg03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
130071789 (pbrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
130071789
NCBI-ProteinID:
XP_056092645
LinkDB
All DBs
Position
Unknown
AA seq
1595 aa
AA seq
DB search
MHLITAFTMGSKRRRATSPSSSVSGGDFEDSQTTSIPSTSRKRRRTTNIPTVDPIAVCHE
LYNTIRDYKDDQGRMLCELFIRAPKRRNQPDYYDVVSQPIDMMKIQQKLKMEEYDDVEQL
TADFQLLFNNAKTYYKPETPECRAACKLWDLYIRTKNEFVQRGDYDEDDDDDDTQETPGG
ATEEESVSSLKEVLGQLLDAVLTYTEHGRLISELFQRLPSKVVQYPDYYAIIKEPIDLKI
VAHRIQMCYYKSVNHMAKDIDLLVKNAKTYNEPGSQVFKDANTIKKIFAQRKLELEHAEP
VKSSIRIRNRRFAQGDRLSSITTALQYGSESEEDAILTGSVHYDEGESEADSLHSSMDMC
NPIFQMYEAVRGGRNSQGQLLAEPFFQLPSRKDLPNYFHQISHPISLQQIRSKMKNNEYE
SVEQIDTDLNLMFENAKRYNAPNSQIYKRVLKLQQILQMKRKELTRRDDEDGDSMLSSTL
SDGGSIKRKSHKKNTKKNRMKALYAAVAEAREMGTGRRLCDLFMVKPSKKDYPDYYKIIL
EPMDLRTIDHNIRSDRYPSEDSMMEDMKLMFRNARHYNEEGSQVYNDANVLEKILREKRR
ELGPPPDDEDIVSPKLKIRKSGISPKKSKYLTPLQQKLNELYEAVKNYTDKRGRRLSTIF
LRLPSRAELPDYYVAIKKPIDMEKVKSHMLSNKYQDVDALVEDLVLMFNNACTYNEPESL
IYKDALVLHKVLLETRRDLEGGDDAHVPDVARLIQELIRNLFVSVLGHQDDEGRCYSDSL
AEIPAVDPNNSDKTPLNFEIIRANVDKGRYRRLDVFQDHMFEVLEKARRLHRTDSEIFED
SVELQQFFIRIRDELCKNGEILLTPALSYTTKHLHSDVEKEKKEKLPKEYEEDKLKREEE
KKEAEKSEDTAGGGWQGVLQRNYSQDCSFKDNMYHVGDYVYVEPTEPNLQPHIVCIERLW
QDDAGENWLYGCWFYRPNETFHLATRKFLEKEVFKSDYFNKIPVNKIMGKCVVMFVKEYF
KLQPDSFRPEDVFVCESRYSAKTKSFKKIKMWTMPLSSVKFVIREVTLPVVRVASMFAPK
QDSEKPPEVVEDGKAAPSIIDKEREDVTMEVSNGEPGCQYYEQLCYNDMWLKVGDCVYIR
SHGLVRNRVGRIEKMWVRDGAAYFFGPIFIHPEETEHEPTKMFYKKEVFLSNLEESCPMT
CVGGKCTVSSFKDFLSCRPTEMPEEDVLLCESRYIESEKQMKKFKGLKRFSLSAKVVEDE
IYYFRKLIVPQKEPSPLLDKKIEELEAKFADMTDEELEDLGDDDGDGSDAHCMPQLQTQL
TGDMDMLHYAPPQSTPKSIKGLSKKEGAKRKINMSGYILFSSEMRAVIKAQHPDFSFGEL
SRLVGTEWRNLEATKKAEYEERAAKVAEQQERERAAQNSPRAGTPVGALMGVVPPPTPMG
MLSHSMTPMAGMNGMAPGSTGSAYGTQMGVMNSGLQAPPPYPGQGQAGTPSLQQPSTPIF
VAPPPKPQRLLHSEAYLRYIEGLSADSTTVSKWDQTLSARRKDVRLTKEQESRLPSHWLK
SKGAHKTMADALWRLRDLMLRDTLNIQHTYNIQNI
NT seq
4788 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgatcacagcgtttacaatgggctcaaagcgacggagagccacgtctccatcc
agcagtgtgagcggaggagattttgaggacagccagacaacatccataccttcaaccagt
cggaagaggagaagaaccacaaacatccccactgttgaccctatcgctgtgtgtcatgag
ttgtacaacactatcagagactataaggatgatcagggcaggatgctgtgtgaactcttc
atcagagcaccaaagagaaggaaccagccggattactatgatgtggtgtcgcagcccatc
gacatgatgaagatccagcagaagctgaagatggaggagtatgatgatgttgagcagctc
acagccgactttcagctcttattcaacaacgccaagacgtactacaaaccagaaaccccg
gagtgcagagcggcttgcaaactgtgggatctgtacattcgcaccaaaaacgagtttgtg
cagcgaggagactatgatgaagatgacgacgatgacgacacacaggaaacccctggaggg
gccacagaggaggagtctgtctcaagccttaaggaagttcttgggcagcttctggatgct
gtgctgacgtacacagagcatgggcgtctcatcagtgaacttttccagagacttccctct
aaagtggtacaatatccagattattatgctattattaaagaaccaatagatctgaagatc
gttgcacaccggatacagatgtgctactataaaagtgtaaaccatatggctaaagacatt
gacttgctagtcaaaaatgccaaaacctacaatgaacccggatcacaagtgtttaaagat
gcaaacaccatcaaaaagatctttgcacagagaaaactggagctcgaacatgcagaacct
gttaaaagtagcatcaggatcaggaacagaaggtttgcacaaggagacagactctcctcc
atcaccactgctctacagtacggctcagagagtgaggaggatgccatactaactggctct
gttcattacgatgaaggcgagtcagaggccgacagcctgcactccagcatggacatgtgc
aaccccatcttccagatgtatgaggcggtgcggggcggcagaaacagccagggacagctc
ctagccgagcccttctttcagctgccctccaggaaagacttgcccaactacttccatcag
atcagccatcccatctccctccagcagataaggagtaagatgaagaacaatgagtatgaa
agtgtggaacagatagatacagacctcaacctgatgtttgagaacgccaaacgctacaac
gctcccaactctcaaatctacaagcgcgtgctgaagttgcagcagatattgcagatgaag
aggaaagaactgacgaggagagatgatgaagatggtgacagtatgctctcatccacgctc
tctgacggtggcagcatcaagcgcaaaagccataagaagaacacaaagaaaaaccgcatg
aaggctctgtacgctgctgtggcagaggctcgggagatgggcacaggacggagactctgc
gacctcttcatggtcaagccctcaaaaaaagactacccagactactacaagattatactg
gaaccaatggacctgaggaccatagaccacaacatccgctctgaccgataccccagtgag
gactccatgatggaggacatgaagctgatgttccgtaatgcacgtcactacaatgaagaa
ggctctcaagtttacaatgacgccaacgttctggagaagatattaagagaaaaacgaagg
gaacttggaccaccgccggatgacgaggatatcgtttcacccaagctgaaaattaggaag
agtggcatctctcctaaaaagtccaagtacctgacccctctccaacagaaactcaatgag
ctctatgaagcagtgaagaactacactgacaagcgtggacggcgcctcagcacaatcttc
ctccgtctcccgtcccgcgctgagcttccagactactatgtggccatcaagaaacccata
gacatggagaaggtcaagagccacatgctttccaacaagtaccaggatgttgatgctctg
gtggaagacttagtcttgatgttcaacaacgcttgcacgtataacgaacctgaatcgctg
atctacaaagatgcattggtgcttcacaaagtgcttttggagactaggcgagacttggag
ggcggcgacgacgcgcatgtcccagatgttgcacggctcatccaggagctcatccgcaat
cttttcgtctcagtgcttggccaccaggatgatgaggggcgttgctacagtgactcgctg
gcggagatcccagctgttgatcctaacaattccgataagactccactgaactttgagatc
atcagagctaacgtggataagggccgttataggaggctagatgtgttccaggaccatatg
tttgaagttttggagaaggccagacgtctgcacaggacggactctgagatcttcgaggac
tctgtggagctccagcagttcttcatccggatcagagatgagctgtgtaagaacggagag
attctgctgacgcccgccctcagttacaccaccaaacacctgcacagcgatgtggagaaa
gagaagaaagagaagctgccgaaagaatatgaagaggataaactcaagagagaagaagag
aaaaaagaggctgagaagagcgaggacacagcaggcggcggatggcagggagtccttcag
cgcaactacagccaggactgcagcttcaaggacaacatgtaccatgtgggagactatgtc
tatgtagagcccacagaaccaaacctgcagccgcacatcgtctgcatagagcgcctgtgg
caggatgatgcaggagagaactggctttatggctgctggttctacagacccaacgaaaca
tttcatcttgcaacacgcaaatttcttgagaaagaagttttcaaaagcgactatttcaac
aaaatccctgtcaataaaataatgggcaaatgtgtcgtcatgtttgtgaaggagtatttc
aagcttcagcctgacagcttccgacctgaagacgtttttgtctgcgagtctcgttattcg
gctaaaaccaagtccttcaaaaagatcaagatgtggacgatgcccctgagctcagtgaag
ttcgtcattcgtgaagtgaccttgcctgtggttcgggtggcctccatgtttgcacccaaa
caggacagtgaaaagcctcctgaggtggtagaggatggtaaagctgcaccatctatcatt
gataaggagagggaggatgtcaccatggaggtcagtaacggcgagccaggctgccagtac
tacgagcagctctgctacaacgacatgtggctgaaagtgggagactgcgtctacatccgc
tctcatgggctcgttcgcaaccgcgtgggcagaatagagaagatgtgggtgcgagatgga
gctgcctatttcttcgggcccatcttcatccatcccgaggagaccgagcatgaacctact
aagatgttctacaagaaggaagtattcctcagtaacctggaagaatcctgccctatgacc
tgtgttggagggaagtgtacagtgtcttctttcaaagatttcctgtcatgccggccaact
gaaatgccggaggaggatgtgttgctgtgtgagagccgctacatcgagagtgagaagcaa
atgaagaagtttaaagggctgaagcgtttctctctgtctgccaaagtagtcgaggatgaa
atctattactttcgaaagctcatagtgcctcagaaggagccgtctccactgctcgataag
aagatcgaagagttggaggccaagtttgcggacatgacggatgaagagctggaggatttg
ggtgatgatgatggagacggttctgatgctcactgcatgcctcagcttcagactcagctg
accggtgacatggacatgctgcattatgcccccccgcagtccacaccaaagtccattaag
ggtttgtcgaagaaggagggggcaaagaggaagatcaacatgagtgggtacatcctcttc
agcagtgaaatgagagctgtcatcaaggcccagcaccctgacttctcttttggagaactc
agtcgactggtgggcacagagtggaggaaccttgaggccactaagaaagcggagtacgaa
gagcgggcagctaaagtagcggagcagcaggagcgagaaagagcagcgcagaactccccg
agagcaggtaccccagtaggggcgctcatgggggtagtgccccccccgacccccatgggg
atgcttagccacagcatgacgcctatggcaggtatgaatggaatggccccggggtcaaca
ggaagtgcttatgggactcagatgggtgtgatgaactcgggcctacaggctccacccccc
tacccaggacaggggcaggctgggacgccctctctacagcagccctccacccccatattt
gtggctcctccacccaaaccccagcgactgctacactcagaggcttacctgaggtatatt
gaaggactcagtgctgactccactactgtcagcaaatgggaccaaacactctctgctcgc
aggaaagatgtgcggctcacaaaagagcaggagagccgtctgccctctcattggctgaag
agcaagggagctcacaagaccatggctgacgctctgtggcgccttcgggacctgatgctg
cgagacacactaaacattcaacacacgtataacatccaaaacatctga
DBGET
integrated database retrieval system
