Rhinichthys klamathensis goyatoka (western speckled dace): 130072459
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Entry
130072459 CDS
T09701
Symbol
ptch1
Name
(RefSeq) protein patched homolog 1
KO
K06225
patched 1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
130072459 (ptch1)
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sterol-sensing
Patched
DcrB
Motif
Other DBs
NCBI-GeneID:
130072459
NCBI-ProteinID:
XP_056093539
LinkDB
All DBs
Position
Unknown
AA seq
1481 aa
AA seq
DB search
MASAVNVSSEQENRDPDRPRLTRRNRGNYRTAAADLEYLQRPSYCDAAFALEQISEGKAT
GRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLRAANLETDVEKLWVE
VGGRVNQELKYTRQKIGEEAMFSPQLMIQTPRQEGTNILTVEALKQHLDSAIKASRVHVY
MYNRQWKLEHLCYKSGELYTENNLVDQIIEKLHPCLIITPLDCFWEGAKLHSGTVYLPGK
SPVQWTNFDPIGFIAELKMLNNPVDIWEEMLVKAGVGHGYMDRPCLNPADPDCPLSAPNK
NMTRPFDVAHVLTGGCYGLSKKYMHWQEELIVGGTKKNDSGKLLSAQALQTMFQLMTPKQ
MYEHLKDYDEVSHINWNEDKAAAVLEAWQRRYSEAVQQSVSVNSSQKVLTFTTTTLEDIL
KSFSDVSVIRIASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLLVTLSVAAGLGLCSLL
GISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALT
SISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRFDIF
CCFVSPCANRVIHLEPQAAYADSSADSSRYSTPPSYSSHSFAQHTQITMQSTVQLRTEYD
PRTQAYYTTAEPHSHISVQPFAPNANPNSNRNNNNNNNNHNNSSAGPAAASDTASCQSPD
GASSTRDLLSQFGESSLRCLEPPCSRWTFASFAENHYAPFLLQPTTKVVVILLFLALLGV
SLYGTTCVRDGLELTDIVPRETGEYDFIRAQFRYFSFYNMYVVTQRADYAQIQPQLYELH
QRFGTVKYVLREENSQLPRMWLHYFRDWLQGVQEAFDKDWQAGRITQGNYRNGSDDGVLA
YKLLVQTGRRDKPVNINLLTRQRLVGADGIINPNAFYIYLSAWASNDPVAYSASQANIRP
HPPEWLHDRTDSIPVSRLNIPAAEPIEYAQFPFYLNGLRETPQFVEAIESVRAICSNYSR
QGLPSYPNGYPFLFWEQYVGLRHWLLLSISVVLACTFLVCAVFLLNPWTAGIIVLVLSLM
TVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDRNKRAVLALEHMF
APVLDGAFSTLLGVLMLAGSEFDFIVRYFFAVLAILTVLGVLNGLVLLPVLLSYFGPYPE
VSPADGRSRLPTPSPEPPPQVVRFTMRPSHTTPGAGSDSSDSEYGSNTTVSGISQELQQY
DLQPNRGRSARLEEVQIATGGRQGSRQVELPMCPSYSDDSRQQQPQRHYRSTHLPSSQDA
GPQSSKRYCSRDPKRDFGSGHPPPPHRPRMDAFETAPEPGGRSGPNHRERSGAHRPRSHN
PYSHPSQPSTGPAYGQPITTVTASASVTVAVHSGMPGQSSTYPSHPSNDSYHTSEDVYTD
PLFSDPHVPFDESNNSSKAEGMELHDLEYDTPNVCHTRPSS
NT seq
4446 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggctgttaatgtctcctccgagcaggaaaacagagaccccgatcggccgagg
ttaacacggagaaataggggcaactatcggaccgccgcggcggatttggagtatttgcag
cgaccgagctattgcgatgctgcctttgcattggaacagatatcagaggggaaggcgact
gggaggaaagcgccgctgtggttgagagcaaagtttcaaagacttttgtttaaacttggc
tgttacatacaaaagaactgcggaaagtttttagttgtgggccttttaatattcggagct
tttgctgttggcttaagggcagctaatctggagacggatgtggagaaactctgggtagaa
gtgggtggcagggtgaatcaggaactcaagtacacgcggcagaagatcggagaggaggcc
atgtttagtcctcagctcatgatacagacgccacgacaggaaggtactaacattctgacc
gtagaggcgctgaagcagcacctcgactccgccataaaggccagcagagtgcacgtttac
atgtacaacaggcaatggaaattggaacatttatgctacaaatcaggagaactttataca
gaaaacaatcttgtggaccagattatagagaaactgcacccatgtctgatcatcactcct
ctagactgcttctgggaaggtgctaagctacattcaggaacagtctacctccctggcaaa
tccccagtgcagtggaccaactttgatccgataggattcattgctgagctgaagatgcta
aacaatccggtggacatctgggaggagatgctggtcaaagcaggggtgggccatggctac
atggatcgcccctgcctgaatcccgcggaccctgactgcccattgtcagctcccaacaag
aacatgacacggccttttgacgtggctcatgttctgactggtggctgctatgggctttcc
aaaaagtacatgcactggcaggaggagcttatcgtaggtgggaccaagaagaacgacagc
ggcaaacttctaagtgcacaggctcttcagaccatgttccaactcatgaccccaaagcag
atgtacgagcacttgaaggactacgatgaagtctcacacatcaactggaatgaggacaaa
gcagctgctgttctagaggcctggcaaaggagatactctgaggccgtccagcagagtgtg
tctgtaaattcgtctcagaaagttctcacgttcaccaccaccaccctcgaagacatcctt
aagtccttctctgatgtcagcgtgatccgtatcgccagtggctacctcctaatgcttgcc
tatgcctgtctgaccatgctgcggtgggactgcgccaagtctcagggggcagtcgggctg
gccggagtgttgctggtcactctttctgtcgccgctggactgggactctgctcgcttttg
ggcatctcctttaacgccgctaccacacaggtgttgccgttcctggcccttggtgtaggg
gtggacgatgtctttcttctggctcatgctttcagcgagactggccagaacaaaaggatt
ccatttgaggaccgcactggtgaatgtctgaagaggactggggctagtgtggccttgacc
tccatcagtaatgtcacagcatttttcatggccgcccttattccaatcccagcactccga
gccttctccttacaggcggcagtggtcgtggtctttaatttcgctatggtgctgctgatc
tttcctgccatcctcagcatggacctgtaccgccgagaggaccgccgctttgacattttc
tgctgctttgtcagcccttgtgctaaccgggtgatccatttggagccgcaggcagcgtac
gccgactcctccgctgactcgagccgctacagcactccgccctcctacagcagccacagc
ttcgcccagcacacccaaatcaccatgcagtccaccgtacagctgcgcacagagtacgac
cccagaacacaggcctactacaccacggcagagccacattctcacatctccgtccaaccc
tttgcccccaatgccaatcccaactccaaccgcaacaacaataacaacaacaacaaccac
aacaacagcagcgcagggccagcagcggcctctgatacagcatcctgccaaagccctgat
ggtgctagctccacacgagacttgctatctcagtttggggagtcgagtttacgctgtctg
gaacctccgtgttctcgatggacgtttgcatcattcgctgagaatcattacgcaccgttt
ttgctgcagcctacaacaaaggtggtggtaattttgctcttcttggcattgctcggggtc
agtctttacggcaccacctgcgtccgggacggtttagagctgactgacattgtgcctagg
gagacgggcgaatacgacttcatccgtgcccaattccgctacttttccttctacaacatg
tatgtggtgacccagagagcggactacgcacagatccagcctcagctctatgagctgcac
caacgattcggcactgtgaagtacgtcctgcgggaggagaacagccagctcccacgcatg
tggctgcattacttcagagactggctgcaaggtgtgcaggaggcattcgataaggactgg
caggccggtaggatcactcaggggaactacaggaacggctctgacgatggtgtcctggcc
tacaaactcctggtgcagaccggccgcagggataagccagtaaacatcaacctgctaacc
agacagcggttggtgggtgccgatggaatcatcaacccaaacgccttctatatttattta
tctgcctgggcgagcaatgacccggttgcctactccgcatcccaggccaacatccgtcca
caccctcctgagtggctccatgacaggacagactccattcctgtcagcagactcaacatt
ccggctgctgagcccatcgaatatgcacagtttcccttctacctcaacgggcttcgtgag
acgccacagttcgtggaggccatcgagagtgtacgtgccatctgtagcaactacagccgc
cagggcctgcccagctaccccaatggctaccccttcctcttctgggagcagtacgtaggc
ctgcgtcactggctcctgctgtccatcagcgtcgtgctggcctgcacctttctagtgtgc
gccgtcttcctgctcaacccctggactgcgggaatcatagtgttggtgttgtctttgatg
acggtggagctgtttggcatgatgggattgatcggcatcaagctcagcgctgtgcccgtt
gtcatcctcatcgcttctgttggcatcggtgtggagtttaccgtccacgtggcactagca
ttcctcacagccatcggggacaggaacaaacgagccgttttagcacttgagcacatgttt
gccccagtgctggatggagcgttttccaccctgttaggagtcttgatgctggcagggtca
gagttcgacttcatagtcaggtatttcttcgctgttttggccatcctaacagtattaggg
gtcctgaatggactggtgctgctcccagtcttattgtcctactttggcccttatcctgag
gtatctccagcggacggacgaagccggctgcccaccccgtctccagagcctcccccacag
gtggtccgcttcaccatgcggcccagtcacacgacccctggagcaggttcagactcctca
gactcagaatacggttccaacactactgtgtctggcattagccaagagcttcagcaatat
gacctccagcccaacagggggcgatcagccagactggaagaggtgcagatcgccacaggg
ggacgacaaggcagtcgtcaagttgaattgccaatgtgtccttcttactcagatgactct
agacagcagcaaccacagcggcattacaggtctacccatctgcccagttctcaggatgct
ggacctcagtcgtcaaagcgatactgtagcagggaccctaagagggattttgggagcgga
cacccgcctccccctcacaggccgcgcatggatgcttttgaaaccgcgcctgagccagga
ggccgttcaggccccaaccaccgggaacgttcaggggcccatcgcccccgttcccacaat
ccttactctcacccttcccagccgtccacaggccctgcctatggtcagcccatcacaacg
gtgacggcctcggcctcggtgacggtcgccgttcattcggggatgcccggccagagctct
acctacccgtcccacccctccaatgacagctatcacacttcagaagatgtctacactgac
cctctcttctccgaccctcacgtgccctttgacgagagcaacaacagctcaaaagcggag
ggcatggagctgcatgatctagaatatgacactcccaatgtctgccacacaagaccctcc
agctga
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