Rhinichthys klamathensis goyatoka (western speckled dace): 130072493
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Entry
130072493 CDS
T09701
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03020
RNA polymerase
rkg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
130072493 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
130072493 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rkg03021
]
130072493 (polr2b)
03400 DNA repair and recombination proteins [BR:
rkg03400
]
130072493 (polr2b)
Enzymes [BR:
rkg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
130072493 (polr2b)
Transcription machinery [BR:
rkg03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
130072493 (polr2b)
DNA repair and recombination proteins [BR:
rkg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
130072493 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
130072493
NCBI-ProteinID:
XP_056093595
LinkDB
All DBs
Position
Unknown
AA seq
1174 aa
AA seq
DB search
MYDQDEDIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKDGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgatcaagacgaagatatccaatatgatgaagatgatgatgaaatcacccctgat
ctgtggcaggaggcctgttggattgttatcagctcatattttgatgaaaaaggtttggtg
cgacagcagctggattcattcgatgagttcatccagatgtctgtgcagaggattgtggag
gatgctccacccattgacctgcaggctgaggcccagcacacatctggagaggtggaggag
ccgcctcggtacttgctgaagtttgagcaaatctacctgtccaaacccactcactgggaa
agagatggtgctccctcacctatgatgccaaacgaagccagactccgaaatctcacgtat
tccgcccctctgtatgtggacatcacaaagactatcataaaggatggggaagagcaacag
cagacgcagcatcagaaaacatttataggcaaaattcccatcatgctccgttccacgtac
tgtctgctgagcggcctgacagatcgtgatctttgtgagttgaacgaatgcccactggac
cctggaggctacttcatcatcaatggttcagagaaggtcctgattgctcaagagaagatg
gccactaacacagtgtatgtgtttgctaagaaagactccaagtatgcttacactggagag
tgcaggtcatgtctggagaactcctccagacccaccagcaccatctgggtcagcatgatg
gcccgtggaggacagggagttaagaaaagtgccatcggccaaaggattgtttccactctg
ccgtacatccggcaggaagttcccatcatcattgtgttccgtgctttgggatttgtgtct
gatagagacatccttgaacacatcatctatgactttgatgatcctgagatgatggagatg
gtgaagccatctttggacgaggcgtttgtgattcaggaacagaatgtggctctgaacttc
attggctccagaggggctaaacctggtgtcaccaaagagagaagaatcaaatatgctaaa
gaggttttgcagaaggaggtgttgccacatgttggtgtatcagatttctgcgagaccaag
aaagcttattttctaggttacatggttcacagactactgttggctgctctgggcagacga
gagctggatgacagagatcactatggcaacaagaggctcgatctcgctggacctttgctt
gcgtttcttttcagaggaatgttcaagaacctgctgaaggagatcaggatctatgcacag
aagtttattgacagggggaaggactttaatcttgagctggccattaagacccgcatcatt
tctgacggactcaagtactccctggccacaggcaactggggggatgtgaagaaagcccat
caggccagagctggagtatctcaggtgttgaacaggttgactttcgcctccactctttcc
cacctgcgccgcgtaaactcgcctataggacgagacggcaagctggccaaacccaggcag
cttcataacacactgtggggtatggtgtgccctgcggagaccccagagggccatgctgta
ggtttggtaaagaatctagctctcatggcctacatctctgtgggatctcagccgtccccc
atcctggagttcttggaggagtggagcatggagaacctggaggaaatctcccctgctgct
attgcagatgcaactaagatttttgtgaacggttgctgggtgggtattcacaaagaccct
gagcagctgatgaacactctacggaagctgaggagacagatggacatcattgtgtctgag
gtgtcaatgatcagagatattcgtgagagggagatcaggatctatacagacgctggcagg
atctgccgtccgctgcttattgtggaaaaacagaaacttctgctgaagagacgacacatt
gaccagctcaaagagagagagtacaacaactacagttggcaggacctggtagccagtggt
gtggttgaatatattgacacactagaggaggaaactgtaatgttggccatgacccccgat
gaccttcaggagaagggcgtggcttattgctccacctacacgcattgtgagatccacccg
tccatgattttgggtgtctgtgcatccattattcctttccctgatcacaaccagtctccc
agaaacacgtaccagtctgctatgggtaaacaagccatgggagtttacatcaccaacttc
catgtgcgaatggataccctggcacatgtgctctactacccccagaaacccttagtcacg
actcgttctatggagtatctacgtttcagagagctgccggcaggtatcaattccattgtg
gctattgcatcatatactggatacaaccaggaagattctgtcatcatgaaccgttcggct
gtggatcgtggattcttcaggtctgtgttctaccgctcgtacaaggaacaggaatctaag
aaaggctttgaccaggaagagatctttgagaaacccacccgagagacctgtcaaggtatg
cgacacgccatctatgacaagttggatgacgatggtttgattgctcccggtgtgcgcgtg
tctggtgaggacgtcatcattggcaaaaccgtaactcttcccgagaatgatgatgagctg
gatagcaccaaccgtcgctacactaagagagactgcagcacgttcctgcgcaccagtgaa
accggaatcgttgatcaagtcatggtcacgctaaaccaggagggctacaagttttgcaaa
atcagagtccgttcagttcgtataccacaaatcggagacaagtttgccagtcgtcacggt
cagaagggtacctgcggtatccagtacagacaagaggacatgccattcacatgtgaagga
atcaccccagatatcatcatcaaccctcacgccatcccttccagaatgacagtcggccat
ttgatcgagtgtctgcaagggaaggtgtctgctaacaaaggagagattggtgatgccacg
ccattcaacgatgctgtgaatgtacaaaaggtctccaacctgctgtcagaatacggttac
catctgagaggcaatgaggttttgtataatgggttcactggccgtaagctcacctctcag
atcttcatcggacccacatactaccagcgtctaaagcacatggtggacgataaaatccac
tccagggcccgtggtccggtccagatcctcaacagacagcccatggagggtagatcacgt
gatggtgggctgcgttttggagagatggaacgtgattgtcagatcgctcacggtgccgct
cagttcctaaaagagaggctttttgaggcatctgacccgtaccaggtccacgtctgcaac
ctgtgcggcctcatggccatcgcaaacacccgcacgcacacctatgagtgcaggggctgc
cgcaacaagacacagatctctttggtgaggatgccgtacgcctgtaagctcttattccag
gagctgatgtctatgagcattgccccacggatgatgaccagctaa
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integrated database retrieval system
