Rhinichthys klamathensis goyatoka (western speckled dace): 130072518
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Entry
130072518 CDS
T09701
Symbol
abca1b
Name
(RefSeq) phospholipid-transporting ATPase ABCA1b
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg02010
ABC transporters
rkg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
130072518 (abca1b)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
130072518 (abca1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rkg02000
]
130072518 (abca1b)
Transporters [BR:
rkg02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
130072518 (abca1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
130072518
NCBI-ProteinID:
XP_056093632
LinkDB
All DBs
Position
Unknown
AA seq
2282 aa
AA seq
DB search
MSVCTQLGLLLWKNFTYRRRQTLQLLTEIVWPLFIFFILISVRLNYPPYEQHECHFPNKA
MPSAGTLPWIQGIVCNANNPCFRHPTPGESPGVVGNFNDSIISRLFSDAKKILLYSQNDK
SLDGFKELISAVKVMQNNTAGFKLKDFLRENETLSTFLRQNASFPQNYVKNILEADVNLE
KVLIKGFGVHLRDMCSSTTLEDFVTIPDKGVARFTQDIICRSPKSWLDQAERHFKSNLDF
LKPLRSDIRTNATDVRQVSKATDKLLESLGSLAVELASMRSWSDLRNEILFLTENATGSP
SLMYKAVSRIVCGHPEGGGLKIKSLNWYEDSNFQALFGSHNDSDDEPVSVYDNTTTPYCN
NLMRNMEASPISRMIWRALKPLLMGKILYTPHSPATQKIIHEVNKTFQELGILRDLGGMW
EEARPKFWNFMENSEEMDLMRTLLRNNATASFFSAQLAGTQWNVEDVISFLYKHSEDTRP
HGTAFTWRDVFNETDQAIMSISRFMECVNLDKLEPVSTEEKLVNESMSLLDNRKFWAGIV
FLDVQHNTLELPPHVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYIWGGFSYLQ
DVVEHSIIRAVTGTKEKTGVYIQQMPYPCYVDDIFLRIMSRSMPLFMTLAWMYSVAIIIK
GVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVLLLKMGNLLPYSDPGV
VFLFLGSFAVVTIMQCFLISTAFARANLAAACGGIIYFTLYLPYVLCVAWQDYVGFTAKV
IASLLSPVAFGFGCEYFALFEEQGVGIQWNNLFSSPLEDDKYNLTTCLILMYFDAFVYGV
MTWYIETVFPGQYGIPRPWYFPFTKSYWFGEKNTNNTAIHGKKGNSGAVCIEEEPTHLEL
GVYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTA
YIMGKDIRSELSSIRRSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEEVKAETEQILT
DTGLPHKRKSRSSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKY
RAGRTILLSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKKNSEPS
LSSCRNSSSTVSFVKKEDNASVSSSDAGLGSDQESEAATAIGTTWPESSVVPVDVALVSS
LILKYVPAARMVEDLGHEITYVLPYESAKDGAFVELFHDLDDRLADLGISSYGVSDTTLE
EIFLKVAEDSGVDAEIISDGTVPVRRHRQHAFGGDHQSCLKPLTEDDDFDCTESYGDPES
KETDYFSVTDGKGSYQVKGWSLKRQQFVALLWKRFLFARRSRKGFFAQIVLPAVFVCIAL
VFSLIVPPFGKYPSLALNPWMYEEQITFISDDAPHDISTQKLLNALLDDPGFGTRCMEGE
PILEAPCTMGDEEWSTPEVAESLMDIFTMTNWTMDNPSPACECSCNGKKKMLPECPAGAG
GLPPPQIKISETETLQNLTGRNISDYLVKTYAQIIGKSLKNKIWVNEFRYGGYSLGARST
QILPPAEEIDDAISRVREIFQLGKNSGSAADRFLKSLSAFINGLDTKNNVKIWFNNKGWH
SIGSFLNVMNNGILRANLPPGKDPRQFGITAFNHPLNLTKEQLSQVALMTTSVDVLVSIC
VIFAMSFVPASFVVFLIQERVNKAKHMQFISGVQPYLYWLANFLWDMCNYVVPATLVILI
FVCFQQKAYVSATNLPVLALLLLLYGWSITPLMYPASFLFKIPSTAYVVLTSVNILIGIN
GSVSTFVMELFGNHEIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADAMERFGENRF
RSPLEWDMVGKNLFAMAVEGAVFFIITVLIQYRFFFEPKSLSAKLSPIGEEDEDVARERQ
RIMNGAKQGDILELRQLTKVYKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLT
GDSVVTKGEAFLAGKSILREIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPENE
VCEVAEWGIRKLGLVKYVDKKAGSYSGGNMRKLSTAISLIGAPPVVFLDEPTTGMDPKAR
RALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYT
IILRVAGPDPDLQPVMKFIESELPGSTLKEKHRNMLQYQLPSSLTSLSHIFSILAKNKEF
LRIEDYSVSQTTLDQVFVNFAKDQSDDHSDSSIRRKETGVNMALLSPLATKENMEKPIES
FV
NT seq
6849 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtctgcactcagctgggtctgctgctctggaagaacttcacctatagaaggaga
caaacgctccagcttctgacggagattgtgtggcctctctttattttcttcatcctgatc
tccgtgaggttgaattacccgccttacgaacaacatgaatgtcactttcccaacaaagcc
atgccctcagcaggcaccctgccatggatccagggcattgtatgcaatgccaacaatccg
tgcttccgacacccaacccctggggaatctccgggagtcgttgggaacttcaatgattcc
ataatctcacgcctgttttctgatgccaagaagatcttattgtacagtcaaaatgacaag
agcttagatggatttaaggagcttatcagtgcagtaaaagtcatgcaaaataacacagct
ggtttcaagctgaaggacttcctgcgtgaaaacgagaccctctcaacgttcctccggcaa
aatgcctcctttccccagaattatgtgaagaatattctggaagctgatgtgaatcttgaa
aaggtgctgatcaaaggttttggcgtccatctgagagatatgtgcagctccaccacactt
gaggactttgtgaccatcccagacaaaggggtggcgagattcacccaggacatcatctgc
aggtctccaaaaagctggctagaccaggccgagagacacttcaagtccaacctggatttt
ctcaaacctcttaggtctgacataaggactaatgccactgatgtccggcaagtttccaaa
gccaccgacaaacttctggagagcctgggatcactggctgtggagctggccagtatgagg
agctggagtgacctgcgaaatgagatcctgtttctgaccgaaaacgctaccggctctccg
agtctgatgtacaaggctgtgtcccgtattgtgtgtggacacccggaaggaggcggcctc
aagattaaatccctcaactggtacgaggacagcaatttccaggcgctgttcggcagccac
aacgacagtgatgacgaaccggtttcagtctacgacaataccaccactccatactgtaac
aacttgatgaggaacatggaagccagtcccatctctcggatgatctggagggcattgaaa
cctcttctgatgggaaagatcctctatacaccacatagccctgcaacccagaagatcatt
catgaggtcaataagacatttcaggagctcggaattctacgagatttaggaggaatgtgg
gaagaagccagaccgaagttttggaacttcatggagaacagtgaagaaatggatctgatg
cggacgcttcttcgaaacaacgccactgctagtttctttagtgcccagttggctgggact
cagtggaacgtggaggatgttatcagcttcttgtataagcactccgaggacacgcgtccc
catgggacggcatttacgtggcgggatgtcttcaatgagacggaccaggccattatgagc
atatcccgtttcatggagtgtgtaaacctggataaacttgaacctgtgagcacagaggag
aaactggtgaatgagtccatgagtctcctggataacagaaagttctgggcaggaattgtg
ttcctggacgtacagcacaacaccttggaacttccaccacacgtcaattacaagatccgc
atggatatcgacaacgtggaacgcacaaacaagattaaagatgggtattgggatcctggt
cccagggctgatccttttgaggatatgcggtatatttggggaggattttcttaccttcag
gatgtagttgaacacagcatcatcagagcagttactgggaccaaagagaagactggtgtt
tatatccagcagatgccttatccatgttatgtagatgatattttccttcgcattatgagc
cgctccatgcctctcttcatgactctggcctggatgtattcggtggccatcatcattaaa
ggcgtcgtctacgagaaagaggcccgactcaaagagaccatgaggattatgggactagac
aacggaatcctgtggttcagctggtttattagcagcctcatccctcttctcgtcagtgca
ggcctgctggttcttctactcaagatgggaaatctcctgccctacagtgaccctggtgta
gtctttctcttcctcgggtcattcgctgtggtaaccatcatgcagtgtttcctgatcagt
actgcgttcgcacgtgccaacctggcagcggcctgcggtggcattatctactttaccctc
tacctgccttatgtgctgtgcgtggcttggcaggactacgtgggcttcaccgccaaagtc
atcgctagcttactgtctccagtggcgtttgggtttggctgtgagtattttgcactgttt
gaggagcagggtgtgggcatccaatggaataacctcttctccagcccattggaagacgac
aaatacaacctcaccacctgcctcatcctcatgtactttgatgcattcgtgtatggggtc
atgacctggtacattgagaccgtgttcccagggcagtatggcattcccaggccgtggtac
ttccccttcactaaatcttactggtttggagagaaaaacacaaacaatactgcaattcat
ggaaagaagggcaattctggggccgtttgcattgaagaggaacccactcaccttgaactg
ggagtttacattgagaatcttgtgaaggtctaccgtcacggaaaaaagctagcggtcgat
ggcttgacacttggcttctatgaggggcagataacctcctttctaggtcacaatggagct
ggaaaaactaccaccatgtctatcctaactgggcttttccctcccacctctggcactgcg
tatatcatgggcaaagacatccgctcagagctgagttctatcaggcggagcctcggagtg
tgtccacaacacaacgtcctcttcagcatgttgacagtagaagagcacatctggttctat
gcccgtctgaagggtctgtctgaggaggaagtgaaggctgagacggagcagatcctgacc
gatactggccttccacacaaacgcaaatccagatccagccaattgtcaggtggtatgcag
aggaaactctcggtagcccttgcttttgttggagggtcaaaggttgtcattctggacgag
cctaccgccggtgtggatccatacgctcgtagaggcatctgggaccttcttctgaagtac
cgtgctggtcgcactatccttctttctacccatcatatggatgaagcagacattctgggt
gatcgtattgccatcatttcccatggaaagctttgttgtgtgggttcctcgctgtttctg
aagactcaactgggaaccggatactatcttaccttggtgaagaaaaactctgaaccttct
ctcagttcttgcaggaactcgagcagcacagtgtctttcgttaagaaagaagacaatgca
tcggtcagcagttcagatgctggtcttggtagcgaccaagagagcgaagctgccacagcg
attggaactacatggcccgaatcttctgtcgttcctgttgatgtggccctcgtctccagt
ctaatcctgaagtatgttcccgcggcccgcatggtggaagacctcggtcatgagatcaca
tatgtgttgccgtatgagtctgccaaagatggtgcttttgttgaactcttccatgacctg
gatgatcggctcgctgaccttggaatttcaagctatggtgtctcagatactacacttgaa
gagattttccttaaagtggcagaggacagtggagttgacgcagaaatcatctctgatgga
actgtgccagtgcgcagacatagacaacatgcatttggcggtgaccaccagagctgcctc
aaacccctgaccgaagacgatgactttgactgcaccgaatcttatggtgatccagaatcc
aaagagacagactatttcagcgtgactgatggaaaaggatcatatcaggtgaaaggctgg
agtttaaagaggcagcagtttgtggccttattatggaagagatttctttttgctcgtcgc
tcaaggaaaggcttttttgcacagattgttcttcccgctgtgtttgtgtgcatcgctctt
gtattcagtcttattgtaccaccatttggaaaatatcccagcctggctcttaatccctgg
atgtatgaagaacaaatcacgttcatcagtgatgatgctccacatgatataagcacacaa
aaattactcaacgccttattagatgatcctggttttggaacacgatgcatggaaggagaa
ccaattcttgaggctccctgtacaatgggcgatgaggaatggtctacaccagaagtggca
gaaagcctgatggacattttcacaatgacgaactggaccatggacaacccatcgcctgct
tgtgagtgcagctgtaatggcaaaaagaagatgctcccagaatgccctgccggtgctggt
ggactgccacctcctcagattaagatcagtgaaactgagactctccagaacctgacagga
cgaaacatctcagactatctagtgaagacttacgcacagatcattgggaaaagcttaaag
aacaagatctgggtgaacgaattcaggtatggaggatattcattgggcgctagaagcact
cagatacttcctcctgcggaggagatcgatgatgccatctctagagtcagggagatcttc
caactgggcaagaactccggatcagctgccgaccgtttcttgaaaagcctgtctgccttc
attaatgggctggacactaagaataatgtcaagatatggttcaataacaagggctggcac
agtattggatcattcctcaatgtaatgaacaatggcatcttgcgtgccaacttaccacct
ggcaaagacccccgtcagtttggcatcactgcgttcaaccatcccctcaatctgaccaaa
gaacagctttctcaagtggccctgatgaccacctcagtggacgtgctggtttccatttgt
gtgatcttcgccatgtccttcgttcccgccagctttgttgtctttcttattcaggaacga
gtgaataaggccaagcatatgcagtttatcagcggagttcagccatacctctattggctg
gccaactttctttgggatatgtgcaattatgtcgttcctgctactctggtgatcctgatc
tttgtgtgcttccaacaaaaagcctacgtctccgccaccaacttgcctgttcttgctctt
cttttgcttctatatggatggtccatcactcctctcatgtacccggcttctttcctcttc
aaaatccccagcactgcttatgtggttctcactagcgtcaacattctcattgggatcaat
gggagcgtctccacatttgtcatggagttatttggaaaccatgagattggtggcattaac
gacatcctgaagaacgttttgctcatcttcccgcacttctgcctgggtcgaggtctcatc
gacatggtgaagaatcaggccatggctgacgctatggagagatttggtgagaaccgtttc
cgttctccactggaatgggacatggtaggcaagaatctttttgctatggctgtggaagga
gcggtcttcttcatcataacagtccttatccagtatcgtttcttctttgaacccaagtct
ctaagtgctaagttgagtccgattggagaggaagatgaagatgtggccagagagaggcag
aggatcatgaatggagctaaacaaggagacattcttgaactccgacaacttactaaggtg
tacaagcggaaacagaagcccgctgtcgatcgtctatgtgtgggaattcctccaggagag
tgttttggtctgcttggtgtcaacggagccggaaagaccagtacttttaaaatgctgacc
ggagactctgtggtcaccaaaggagaagcattcttagctggaaaaagtattctcagggaa
atagatgaagtacatcagaacatgggctactgccctcaatttgacgccatcaatgatctg
ctgacaggacgggaacacctggaattttacgctatcctgcgcggtgtacctgagaatgaa
gtctgtgaggtggcagagtggggaatccgtaaactgggtctagtgaagtacgtggacaaa
aaggcaggaagctacagtggaggcaacatgcgcaaactctccaccgccatatcactcatt
ggagcccctccagtggtcttcctggacgagcccaccacaggaatggacccgaaagcacga
cgagcactgtggaactgcatccacagcgtcatcaaagagggacgctccgtcgtgcttacc
tctcacagcatggaagaatgtgaagcgctgtgcaccaggatggccatcatggtgaacggc
aggttccgctgtctgggtagtgtccagcacctgaagaacagatttggcgatgggtacacc
atcattctgagggttgcggggccagatcctgacctgcagccggtgatgaagttcattgag
agcgagctgccgggcagcacactgaaagagaaacacagaaacatgctacaataccagctt
ccctcctccctcacctccctctctcacatcttcagcattctcgccaagaacaaagagttt
ctcaggatagaggactactctgtgtcccagaccactctggaccaggtatttgttaacttt
gccaaggaccaaagtgacgaccactcagacagctccattcgtcgtaaagagacaggggtc
aacatggccctcctcagccctctggctactaaagagaacatggagaagccaatagaaagc
tttgtctga
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integrated database retrieval system
