KEGG   Rhinichthys klamathensis goyatoka (western speckled dace): 130072525
Entry
130072525         CDS       T09701                                 
Symbol
smu1a
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
rkg  Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:rkg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rkg03041]
    130072525 (smu1a)
Spliceosome [BR:rkg03041]
 Complex B
  Other components
   Complex B specific factors
    130072525 (smu1a)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_TEP1_2nd WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_CAF1B_HIR1 EIF3I WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd LisH_TPL NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_Nup120_160 Ge1_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_Vps41 WD40_MABP1-WDR62_1st Beta-prop_NWD2_C Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_NUP159_NUP214 Beta-prop_IFT140_1st Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_BBS7 Beta-prop_VPS8 DUF7165 WD40_RFWD3 Beta-prop_IP5PC_F TFIIIC_delta Beta-prop_WDR75_2nd WD_LRWD1 VPS8_N LisH Beta-prop_NOL10_N zf_topless Phi29_Phage_SSB PROPPIN LisH_PAC1 PA14 LisH_WDR26
Other DBs
NCBI-GeneID: 130072525
NCBI-ProteinID: XP_056093639
LinkDB
Position
Unknown
AA seq 513 aa
MSIEIESADVIRLIMQYLKENNLHKTLVTLQEETTVSLNTVDSIESFVADINSGHWDTVL
QAIQSLKLPDKTLVDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQSLKWQQHQGLLPP
GMTIDLFRGKAAVKDVEEERFPTQLARHIKFGQKSHVECSRFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCMSFSRDTEMLATGAQDGKIKVWKIQSGQCLR
RFERAHSKGVTCLSFSKDSTQILSASFDQTIRIHGLKSGKSLKEFRGHSSFVNEATLTPD
GHHVISASSDGTVKIWNVKTSECTSTFKSLGTSAGTDITVNNVIQLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTL
TVHEKDVIGIAHHPHQNLISTYSEDGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtctattgaaatagagtcagcagacgtgatccgtctgatcatgcagtacctgaaggaa
aacaacttgcataagactttagtgacactccaggaggagacgacagtgtccctcaacacg
gtggacagtattgagagttttgtggccgatatcaatagcggtcactgggacactgtactt
caggctatacagtccctcaaactccctgacaagaccctcgttgacctttacgaacaggtc
gttcttgagctgattgagctccgagagttgggagctgccagatctttgttgaggcagacg
gaccccatgatcatgctcaaacaaactcaacctgagcgatacatccacctagagaacctt
ctggctcgctcatactttgaccccagagaggcctatcctgatggcagcagtaaggagaag
cgtagagcagccatagctcaggctctcgctggtgaggtcagtgtggtaccaccgtcacgt
ctgatggctctgcttggacagtctctgaagtggcagcagcatcagggtcttctgcctcct
ggtatgaccattgatttgttcagaggtaaagcagctgtgaaggacgtagaggaggagcga
ttccccacacagctggccagacacatcaagtttggtcagaagtctcatgttgagtgctca
cgcttctctcctgatggccagtatctggtcactggatctgtggacggatttattgaagta
tggaacttcactactggaaaaatcagaaaggatctgaagtatcaggctcaggataacttc
atgatgatggatgacgcagtgctgtgcatgtctttcagtcgggacactgagatgttggcc
acaggagcccaagacggcaagattaaggtatggaagattcagagcggtcagtgtctgcgg
cggtttgagcgcgctcacagtaaaggcgtcacctgtctcagcttcagtaaagacagcact
cagattctctccgcgtccttcgaccagactatcaggattcatgggttaaaatcgggcaag
tctttgaaggagttcagaggtcattcttcatttgtaaatgaagccacacttactcctgac
ggacatcacgtcattagcgcctcatctgatggaactgtgaagatctggaacgtgaagacc
tcagaatgcaccagcacatttaagtctctagggacctccgcgggaacagacatcactgtt
aacaatgtcatccagctccccaaaaacccagagcattttgttgtgtgtaaccgatccaac
actgttgtcatcatgaacatgcaaggccagattgtgaggagtttcagctctggtaagaga
gagggaggtgattttgtgtgctgtactctgtctccacgtggcgagtggatctactgtgtc
ggagaggactttgtgctttactgtttcagcacagtcacaggcaaactagagagaaccttg
accgttcatgagaaggatgttattggtattgcccaccacccacaccagaatttaatctcc
acatacagtgaggatgggctcctcaaactctggaagccataa

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