Rhinichthys klamathensis goyatoka (western speckled dace): 130072538
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Entry
130072538 CDS
T09701
Symbol
mid1
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130072538 (mid1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rkg04121
]
130072538 (mid1)
Enzymes [BR:
rkg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130072538 (mid1)
Ubiquitin system [BR:
rkg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
130072538 (mid1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
COS
SPRY
zf-B_box
ANCHR-like_BBOX
fn3
RING_XB3-XBAT31
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-C3HC4_3
Pur_ac_phosph_N
zf-RING_5
Ig_DSCAM-DSCAML_C
PRY
Inhibitor_Mig-6
U-box
Motif
Other DBs
NCBI-GeneID:
130072538
NCBI-ProteinID:
XP_056093656
LinkDB
All DBs
Position
Unknown
AA seq
658 aa
AA seq
DB search
MDTLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHRSSSDESKPVSAFQCPTCR
YAIALDPQGLDGLKRNVTLQNIIERFQKASLSGPNSPSETRRTSMSSPVQCQFCETDPPQ
EALKTCVTCEVSYCQECLRATHPNKKPFTGHRLTEPVPDARVRGLACAEHAEEKVNMYCV
TDEQLICSLCKLVGHHREHQVAALGERFDKLKQMLDSNLSNLIKRNSELENLMGKLIQTC
QHVEHNAAHQESKLTEECDTLINIVQQRRQIIGTKIKEGKVVRVRKLAQQIANCKQFVER
SSSLIAQADQALKETDHARFLQTAKSISERVSMATASSQVLIPEINLNDTFDAFALDFSR
EKKMLEGLDYLTAPNAPTIREELCTASHDTITVHWTSEDEFSVVSYELQYTISTGQANVV
SLCNSLDSWMIAPNIKQNHYTVHGLQSGTRYIFIVKAMNQAGSRSSAPGKLKTNSQPFKL
DPKSAHRKLKVSHDSLTVERDEASSMKSHAQDRFGSGNYGVTGNVFIDSGRHYWEVLIGG
STWFAIGVAYKSAPKHGWVGKDSTSWVLSRCNTSWAVRHNSKEFPIEPSPHMRRLGVLLD
YDSGSLAFYDAAGTQHLHTFDISFSQPICPVFSVWNKCLTVLTGLPIPDHLETGDPHN
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggacacactggagtcggagttgacttgcccaatctgtctggagctgttcgaggatcct
cttcttctgccctgcgcccacagcctgtgctttaactgtgctcaccggatcctggtgtcc
caccgaagctcatccgacgagtccaaacccgtctccgctttccagtgtcccacctgccga
tatgccatcgccctcgacccgcagggcctagacgggctcaagcgcaacgtgactctgcag
aacatcatcgagcgcttccagaaggcctcgctgagcggcccgaactccccgagcgagacc
cggcgcacgagcatgagttccccggtccagtgccagttctgcgagaccgacccgccccag
gaggcgctgaagacctgcgtgacctgtgaggtctcgtactgccaggagtgcctgcgggcc
acgcaccctaacaagaagccgttcacgggtcaccggctgacggagccggtaccggacgct
cgggtccgaggactggcctgtgccgaacacgcggaggagaaggtcaacatgtactgtgtg
acggatgagcagctgatctgctctctgtgtaaactggtcgggcatcaccgagagcaccag
gtggcggcgctgggggagcgcttcgacaagctgaagcaaatgttggattccaacctcagc
aatttgatcaagaggaacagcgagctggaaaacctcatggggaagttgatccagacgtgt
caacatgtggagcacaacgcggctcatcaggagagcaaactgacggaagagtgcgacacg
ctgataaacatcgttcagcagaggagacaaatcatcggcaccaagataaaagaaggaaaa
gtggttcgggtgagaaagctagctcaacagatcgctaactgtaagcagtttgtggagaga
tcgtcctcactcatcgctcaagcggatcaagctctgaaagagacggaccacgctcgattc
ctgcagactgcaaagagcatctcagagagagtctcaatggcaaccgcgtcctcacaggtc
ctgattccagagatcaacctgaacgacacgtttgacgcgttcgcactggacttttccaga
gagaagaagatgctggaaggtctggattacctcacagctccgaacgctcccaccatccgc
gaggagctctgcacggcctctcacgacaccatcacagtccactggacatcagaggacgag
ttcagtgtggtctcatacgagctccagtacaccatctccaccggccaggctaacgtcgtc
agtctgtgtaactcgctggacagctggatgatcgcgcccaacattaagcagaaccactac
accgtccacggcctgcagagcggcacccgctacatcttcatcgtgaaggccatgaaccag
gccggcagtcgcagcagcgcgccggggaagctcaagaccaacagccagccgttcaagctc
gacccgaagtcggcccaccgaaagctgaaggtttcccacgacagcctgacggtggagcgc
gacgaagcctcgtccatgaagagccacgcccaggaccgcttcggctccgggaactacggc
gtcaccgggaacgtgttcatcgacagcggacgccactactgggaggttctgatcgggggg
agcacgtggtttgcgattggcgtcgcatacaaatcggctcccaaacacggctgggtgggg
aaggactcgacgtcgtgggtcttgagccgctgcaacacctcgtgggccgtgcgtcacaac
agcaaagagttccccatcgagccgtctcctcacatgcggcgcctgggggttctgctggac
tacgactccgggtcgctggcgttctacgacgccgcaggaacacaacacctccacaccttc
gacatctccttctctcagcccatctgccccgtcttcagcgtgtggaacaagtgcttgacc
gtcctgaccgggctgcccattcccgaccacctggagaccggcgacccgcacaactga
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integrated database retrieval system
