Rhinichthys klamathensis goyatoka (western speckled dace): 130072574
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Entry
130072574 CDS
T09701
Symbol
pms1
Name
(RefSeq) PMS1 protein homolog 1
KO
K10864
DNA mismatch repair protein PMS1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rkg03400
]
130072574 (pms1)
DNA repair and recombination proteins [BR:
rkg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
130072574 (pms1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HATPase_c_3
HMG_box_2
HMG_WDHD1
HATPase_c
Motif
Other DBs
NCBI-GeneID:
130072574
NCBI-ProteinID:
XP_056093710
LinkDB
All DBs
Position
Unknown
AA seq
903 aa
AA seq
DB search
MKALPPETVRLLCSSQVITSVLNVVKELTENSLDAGSSSLEVKLENYGLDRIEVRDNGSG
IKATDVPVMAVQHYTSKISCHEDLEHLESYGFRGEALASICAISEVVITTKTADDDFSIQ
YSVDHNGQIVSQKPSHLGEGTSVCAANLFKNLPVRRQYYSNTKKCKEEMKRVQNLLMAYA
VIKPELRITLSHNKAVVWQKSRVSDHRTALMAVLGAASVANMLPVQHHQEQPEIGIDGFL
PKPGSDFNSTSSYTPDKTFIFVNSRPVHAKEILKLIKQYYASAQLNDESANRRYPFLMMN
ITIPASTVDVNLTPDKTEVMLQNKEEVLLAVETMLISLYGYSTGDDNLKTGGNRPNASYV
DVTEHANVVVPTPTTDISLNNPELLEHSSTNADKQDGELSVNNTANTSSSSISEDWVINR
SSSDFDSINSSLPADDVVMNSTADLNCNSPKATKSDSGPGQESEISAESWSTGRAFSNQI
TRECLEPVKLHVPKANEDLGGTEPTSTSKRPSNVIMEKMAKLTAYELISNRSVRQPLSAF
SLFEQDTRSQVLQENPRASPQDVTTAVKESWESLGEEDRKKYESKAEKSLNAYNLQRKRA
TEGGGQCGEGKKQMSAESSLNKAQGVKRKAPLANQQALDKLFSSQPSSKRSLAKLSKPLP
FSIATLKQSLNLLSYQNSSSAQGLRLVNRLASHGAWVVLCGRKLMLLNPFRVEEALLFKR
LLKNNILPTVRQQTPVPLTDGLLGGPEYMDVLLDMEKDSACFNGHVYFTDPRLLANGFEI
RMIPGSSSSERHVEVTGMADCMPFFGIGDLREILQAIKVRDAKTVEQCRPLKVSNYLESE
AVRLARQLPLNLSRADVTNTLYRMKHELEEESQVCIHGRPFFHDLVTIPETEQEALQIMC
SSC
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcgcttccacctgagactgtgcgtctgttgtgcagctctcaggttataacatct
gtcctgaatgttgtcaaggaactgactgaaaattcacttgatgctggttcttcaagcctt
gaagttaaactggagaattatggattggatcgcattgaagtcagagacaatggttctgga
atcaaagctactgatgttcctgtgatggctgtacaacactacacatctaaaatctcctgc
cacgaagacctggagcacctagagtcttacggcttcagaggagaagctctggcatctata
tgcgctatctcagaggtggtcatcactaccaaaaccgcagatgatgattttagcattcaa
tattcagtcgatcacaacggacagatcgtctctcaaaagccatcacatcttggcgagggc
accagtgtgtgtgcagcaaatctgttcaagaacctccctgtcagacggcagtattattcc
aacactaagaaatgcaaagaggaaatgaagagggtccagaacttactcatggcctatgct
gttattaagcctgagttaaggatcacgttgagccacaacaaggctgtggtctggcagaaa
tccagggtgtcggatcaccgaactgccctcatggccgtgctcggagcggcctccgtagcc
aacatgctccccgtccagcatcaccaggagcaaccagagatcggcatcgatggattcctt
cccaaaccgggctcagattttaattccaccagctcctatacacctgataaaacattcatc
tttgtaaatagtcgacctgtgcatgccaaagaaatacttaagcttatcaagcaatactat
gccagtgctcaattgaatgatgaatctgcaaaccgccgatatccctttttaatgatgaac
atcaccatacccgcctcgacggtggacgttaacctgacacctgataaaaccgaagtgatg
ctacagaataaggaagaagtgctgttggcggtggagactatgttaatctccttgtacggc
tactccactggcgatgataatctcaaaacaggaggaaatcggcccaatgctagttatgtg
gatgtaactgaacatgctaatgtagttgttcctacacctaccacagatattagtttgaac
aacccagaattgcttgagcattcttccacgaatgcagataaacaagatggtgagctatcc
gtgaacaacactgcaaacaccagctcctcttcgatttcagaggattgggtgatcaacaga
agctcaagtgattttgacagtataaattcctcattacctgctgacgatgttgtaatgaac
tctacagctgatctaaactgtaactccccaaaggcgactaagagtgatagtggccctggt
caagagagcgaaatatctgctgagagctggagcacaggcagggccttctcaaatcaaatc
accagagaatgcctggaacctgtgaaactccacgtcccaaaagcaaatgaagacctcgga
ggaactgagcccacaagtacgtccaagaggccctctaacgtgattatggagaaaatggcc
aagctgacagcctacgagctgatcagcaaccgctctgtgcgtcagcccttgtctgccttt
tcactgtttgagcaagacaccagatcgcaggtcctccaggagaacccaagagccagtcct
caggatgtcacaactgctgtgaaagagagctgggaaagcctcggggaggaagaccgcaag
aagtatgaaagcaaggcagaaaagtctctgaacgcctacaaccttcaaaggaagagggca
acggagggaggtggccagtgcggagagggcaagaagcagatgagcgcagagtcttcattg
aacaaagctcaaggcgtgaagcgcaaggcccccctcgccaaccagcaggccctggacaaa
ctcttctcctctcagccctcgagtaagaggagccttgccaagctctccaaacccctcccg
ttcagtattgcaaccctcaagcagagtcttaacctcctctcctaccagaacagctcaagt
gcgcagggcctcaggcttgtaaaccgcttggcttctcacggtgcctgggtcgttttatgc
ggcagaaagctcatgttgttgaacccgtttcgagtggaggaggccttgctgtttaaaaga
cttctgaagaataatatacttccaaccgtgaggcagcagacccctgtaccgctgacagat
gggttgcttggtgggccagaatacatggatgttctcctggacatggagaaagacagtgcc
tgctttaatggacacgtttactttactgatcctaggcttctggcgaatggttttgagatt
aggatgattccaggttcctcgtcttctgagaggcatgttgaagtgacgggcatggccgac
tgcatgcctttcttcgggataggagacctgagggaaattctgcaggctataaaggtccgg
gatgcaaaaaccgtggagcaatgtagacctctcaaagtctcaaactacctagagagtgag
gctgtgagactagctagacagttacctctaaacctctccagagctgatgttacaaacacg
ctttaccgaatgaaacatgaacttgaagaggaaagtcaggtctgcattcacggacgacca
ttttttcacgacctggttaccattcctgaaaccgagcaggaagctctgcaaatcatgtgt
agttcttgctaa
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