Rhinichthys klamathensis goyatoka (western speckled dace): 130072608
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Entry
130072608 CDS
T09701
Symbol
taf1
Name
(RefSeq) transcription initiation factor TFIID subunit 1 isoform X1
KO
K03125
transcription initiation factor TFIID subunit 1 [EC:
2.3.1.48
2.7.11.1
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130072608 (taf1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
rkg01001
]
130072608 (taf1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rkg03021
]
130072608 (taf1)
03036 Chromosome and associated proteins [BR:
rkg03036
]
130072608 (taf1)
Enzymes [BR:
rkg01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
130072608 (taf1)
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
130072608 (taf1)
Protein kinases [BR:
rkg01001
]
Serine/threonine kinases: Other
TAF1 family
130072608 (taf1)
Transcription machinery [BR:
rkg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
130072608 (taf1)
Chromosome and associated proteins [BR:
rkg03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
130072608 (taf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3591
Bromodomain
TBP-binding
zf-CCHC_6
Cac1_C
Motif
Other DBs
NCBI-GeneID:
130072608
NCBI-ProteinID:
XP_056093763
LinkDB
All DBs
Position
Unknown
AA seq
1979 aa
AA seq
DB search
MSDSDSDEDQDRPFHLTGFLFGNINENGQLEDDSVLDTESKKHLAGLGSLGLGSLITEIT
ASEEETAEQEQDQSNTDAEGWVRSTDDAVDYSDISEVAEDETRKYRQAMGNLQPSRKMDE
EDDYDADCEDVDAKLMPPPPPPSLSIPTKKEDTPTQNSSVTDEADGIILPSIIAPSSVGD
KVDFSSSSDSESESDRPSQGSGTGGQAGCLTLPLAGIMQKDAAKALPGVTELFPEFRPGK
VLRFLRLFGPGKNMPSVWRSARRKRKRKQREPQSDPATGDNESQPPEPGAKKKSGWDYEY
APPPPAEQCLSDDEITMMAPVESKFLQVSGEGDKVSEVRPKVAEWRYGPAQLWYDMLGVP
EDGSGFHYGFKLRDDQQQDCTDAAEKTANPPASEPVSEQEPPQEAQAEQGDEVSPMQDEL
FLMVTQLQWEEDIIWNGDDVKHKGTKTQRASLAGWLPTSMTRNANAYNAQQGLSRSNSQL
VPPTPPPLVKTPSITGSKRDKHNHDHQVAHEDDIPWFSIFPIDNEELVYGRWEDNIIWDD
QSMDCLPSPPILTLNPNDENIILEIPDEKEERASHSPSKENKKETALKKSRILLGKTGVI
KDEPQQNMSQPEIKDPWNLSNDEFYYPKQQGLRGSFGGNIIQHSIPAVELRQPFFPTHMG
PMKLRQFHRPSLKKYSFGALSQPGPHPTQSLLKHIKKKAKMREQERQASGGGDMFFMRTA
QDLTGKDGDLILAEYSEEYPPLLMQVGMATKIKNYYKRKPGKDPGAPDCKYGETVYCHTS
PFLGSLHPGQLLQAFENNLFRAPIYLHKMPETDFLIIRTRQGYFIRELVDIFVVGQECPL
YEVPGPNSKRANTHIRDFLQVFIYRLFWKSKDRPRRIRMEDIKKAFPSHSESSIRKRLKL
CADFKRTGMDSNWWVLKPDFRLPTEEEIRAMVSPEQCCSYYSMLVAEQRLKDAGYGEKSF
FAPEEENEEEFQMKIDDEVRTAPWNTTRAFIAAMKGKCLLEVTGVADPTGCGEGFSYVKV
PNKPTQQKDDREPQPVKKTVTGTDADLRRLSLKNAKQLLRKFGVPEEEIKKLSRWEVIDV
VRTMSTEQARSGEGPMSKFARGSRFSVAEHQERYKEECQRIFDLQNKVLESTEVLSTDTD
SSSAEDSDFEEMGKNIENMLQNKKTSSQLSREREEQERKELQRMLMGEDNERERGRKERR
KGSSALSTSSHKDDDASSVTSLNSSATGRRLKIYRTFRDEDGKEYVRCETVRKPAVIDAY
LRIRTTKDDDFIRKFALFDEQHREEMRKERRRIQEQLRRLKRNQEKDKFKGPPEKKAKKA
KERPDLKLKCGACGAIGHMRTNKFCPLYYQTNAPPSNPVAMTEEQEEELEKTVIHNDNEE
LIKVEGTKIVLGKQLIESADEVRRKSLVLKFPKQQLPPKKKRRVGTTVHCDYLNRPHKSI
HRRRTDPMVTLSSVLESIINDIRDFPNTYPFHTPVNGKVVKDYYKIITRPMDLQTLRENV
RKRMYPSREEFRESVELIYKNSATYNGAKHPLTLVGQAMLSLCDEKLKEKEERLVRLEKA
INPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIINPMDLESLR
KNISKHKYQNREVFLSDVGLIHTNSVKYNGPDSPYTKTALEIVNVCKQTLAEYDEHLTQL
EKDISTAKEAALDAADLESLDPLTPGPYTPQPDVCENSVSVSLQGDSSLLAEATLIPPTP
EKRGGQGRHSRGRMGEEESDVDIEGFEEDDDGKPKTPAPAEEGDMDDEDDEDDEDDLLMR
PQRRMHGDEEEYEDDEGSRRPAQASVLYQDLLMSDAEDDASEEEGDNPFSSIQLSESGSD
SDAELGHQESTRIGIEQDESMMSYDGEGHDGVTHMEDSNVSYGSYYDGDSQMQRQVSSPR
TGEQDVEEMYGISEEEEDEEEDERRRGPSVLTQAQLSDEEEDSEEFRSVGGDSDMDSDN
NT seq
5940 nt
NT seq
+upstream
nt +downstream
nt
atgtcagactccgacagcgatgaggaccaggaccggcccttccacttgacagggtttctg
tttggaaacatcaatgagaatggacaactggaagatgacagtgtgctggatacagagtca
aagaagcacctggctggtctgggctctctgggtttgggttcgctcattacagagatcaca
gccagcgaggaggaaaccgctgagcaagagcaagatcagagcaacactgatgcagaggga
tgggtaaggagcacagacgatgcagttgattactcggatatcagtgaagttgcagaagat
gaaacccgcaaatacagacaagccatgggcaacctgcagccatcacggaaaatggatgaa
gaggatgattatgatgctgattgtgaggatgttgatgccaaactcatgcctcctccccct
ccccctagtctgtcaatccctaccaagaaagaagacacacccactcagaacagcagtgtg
actgatgaggctgatggtatcatcctaccttccattattgctccatcatctgtgggtgat
aaagttgattttagcagttcatcagacagtgagagtgagagcgatcgaccttctcagggt
tcagggacaggaggacaggcaggatgtctcaccctccctcttgcaggcattatgcagaaa
gatgctgctaaagccctgcctggggtcacagagctcttccctgagttcagacctggaaag
gtgttgcgtttcttgcggttgtttggtcctggtaagaacatgccatctgtatggcgaagt
gctcggaggaaacggaaacgaaagcagagagagccacagtcagaccctgctacaggtgac
aatgaatcgcaaccacctgagccaggggctaagaaaaaatcaggatgggactatgagtat
gcaccacctccaccagcggagcagtgtttgtctgatgatgagatcaccatgatggctccg
gtggagtccaagttcctgcaagtgtctggtgaaggtgataaggtgtctgaggtgaggcca
aaggtggcagagtggcgttatggtccagcacagctttggtatgacatgcttggcgtcccg
gaggatggcagcggctttcattatggatttaagctcagagatgaccaacagcaagactgt
actgatgcagcggaaaaaactgctaatccaccagcttctgaaccagtcagtgagcaggaa
ccaccccaagaagcacaagctgagcagggggatgaggtgtctccgatgcaggatgagttg
tttttaatggtgacccagctgcagtgggaggaagacatcatctggaatggagatgatgtg
aaacacaagggcactaaaactcagcgtgccagtctggccgggtggcttcctactagcatg
acccgtaacgccaatgcttataatgctcagcagggtctaagtcgcagtaattcgcagttg
gtgcccccgacccctcctcctttggtcaaaactccatccataacaggttccaaaagagac
aaacataatcatgatcatcaagttgctcatgaggatgacatcccttggttctccatattc
ccaattgataatgaggagcttgtgtatggacgttgggaagacaacataatctgggatgac
cagagcatggactgcctcccttctcctcccattctcaccctcaaccccaatgatgaaaac
atcatactcgagatcccagatgaaaaagaggagagagcctctcattctccttccaaagaa
aacaaaaaagagacggcactgaaaaaaagtcgcattctgctgggaaagacaggcgtcatc
aaagatgaacctcaacagaatatgtcccaaccggagattaaagatccctggaatctgtca
aacgatgagttctactaccctaaacagcaggggctcaggggcagctttggaggaaacatc
atccagcactccatccctgctgttgagttgaggcagccattcttcccaactcacatggga
cccatgaaactacggcagtttcatcgaccctccctgaagaagtactcatttggagcactg
tcccagcccggcccgcacccaacccagtctctcctcaaacacatcaagaagaaggctaag
atgcgagaacaggagcgtcaagcatcgggtggaggggacatgttctttatgcgcacagct
caagatctaacgggcaaagatggagacctgattttggctgaatatagtgaggagtatcct
cctcttctcatgcaagttggcatggcgaccaagatcaagaactactacaaaagaaaacca
ggtaaagacccaggagcacctgactgtaaatatggagagacagtttactgtcacacttct
ccattcctgggatcattgcatcctggacaactactgcaggcctttgaaaataacttgttc
agagctcccatctatctacataagatgcctgagactgatttcctgattatccggacaagg
cagggctacttcatccgagagcttgtggacatatttgttgtgggtcaggagtgccctctc
tatgaggtgccagggcctaactctaaacgagctaacacacacattcgagatttcctacag
gtgtttatctatcgtctgttctggaagagtaaagatcgccctcgccgtatacgtatggag
gacataaagaaagcttttccctctcactctgaaagcagcatccgcaaacgcctcaaactc
tgtgctgacttcaaacgcacaggtatggattctaactggtgggtgctgaaacctgatttc
cggcttccaaccgaagaggagatcagagcaatggtttccccagagcagtgttgttcgtac
tacagtatgctggtggcggagcagagactaaaggatgctggttatggtgaaaagtctttt
tttgcacctgaggaagagaatgaggaggaattccagatgaagattgatgatgaggtacgc
actgcgccatggaacacaactcgggcgttcatcgcagccatgaaggggaagtgtctcctg
gaggtcacaggggtcgctgaccccaccggctgtggagaaggtttttcatatgttaaagtc
cctaacaaacctacacagcagaaggatgatcgagagccccagccagtgaaaaagactgtg
acagggactgatgcggatctgagacgcttgtcgctcaaaaatgccaaacagttgctccgc
aagtttggagttcctgaggaagagataaagaaactttcccgttgggaggtgatcgatgtt
gtgaggaccatgtctactgaacaggctcgttctggggaggggcctatgagtaaatttgct
cgtgggtctcgattctctgtagcggaacatcaagaacgttacaaagaggaatgccagagg
atctttgacctgcagaacaaagtactggagtccacagaggtgttatcgacggacacagac
agcagctcagcagaggacagtgattttgaggagatgggaaagaacatagaaaacatgttg
cagaataagaagaccagctctcagctgagcagagagagagaagaacaggagagaaaagaa
ctgcagcggatgctgatgggagaggacaatgagagagagaggggccgcaaggaacgacgc
aaaggctcgagcgccctctccaccagctctcacaaagatgatgacgcttcctccgtcact
agcctgaactcttcagcaacagggagaaggctgaaaatttatcgcacattccgtgacgag
gatggtaaagagtatgtgcgctgtgagactgtacgcaaaccggctgttatcgacgcctat
ttgcgtatacgcaccacaaaggatgatgacttcattcgcaagtttgcattgttcgatgaa
cagcacagggaggagatgagaaaggaacggcgacgaattcaggagcagctgcggcgcctt
aaacgaaaccaggagaaagacaaatttaaaggtccacctgagaaaaaggccaaaaaggcc
aaagaacgaccagacctgaagctgaaatgtggtgcttgtggggcaattggacacatgaga
accaataagttttgcccattgtactaccaaaccaatgccccaccttctaatccagtggcc
atgacagaggagcaggaagaggagcttgagaagactgtcatccacaatgacaatgaagaa
cttattaaagtagaaggaaccaagattgttcttggaaagcagctcattgagagtgctgat
gaagtgcggaggaaatctctggttctgaagttccctaagcagcagcttcctcctaaaaag
aagagacgtgtggggacaacagtacactgtgactacctcaatcgtcctcataagtccatc
catcgcagaaggacagaccccatggtcacactctcttcagtcctggagagcatcattaat
gacataagggactttcctaatacgtacccctttcacactcctgtgaatggcaaagtagtt
aaggattattacaagatcatcacacgaccgatggacctgcagacgttacgtgaaaatgtt
cgcaagcgcatgtacccttcacgagaagagttcagagagagcgtcgaactcatctacaaa
aatagcgctacgtacaatggtgcaaagcatcctttaacccttgttggtcaagcgatgctg
agtctgtgtgatgagaaactgaaagagaaagaggagcgtttggttcgtttggaaaaagcc
attaatcctcttctggacgatgatgatcaggtcgctttctccttcatcctcgacaacatt
gtcacacagaagatgatggctgttcctgattcctggcccttccatcatcctgttaacaag
aaatttgttcctgattattataaagtcatcatcaaccccatggatctggaaagtctccgt
aagaacatctccaaacacaagtatcagaaccgggaggtgtttctttctgatgttggtctc
attcacaccaacagtgttaagtacaatggtcctgatagtccttataccaaaacagctctg
gaaattgtgaatgtctgcaagcagactttagcagagtatgacgaacacctgacccaactg
gagaaggacatctctactgctaaagaagctgctctggacgctgcagaccttgagagctta
gacccgttgactcctggaccgtacacaccgcagcctgatgtatgtgagaacagtgtgtct
gtgagtttgcagggagattctagtctgttagccgaggctacgctaatccctcccacccct
gagaaaagaggggggcagggtcgtcacagcagaggcagaatgggtgaggaggagtctgat
gtggacatagaaggatttgaggaagatgatgatggcaaacctaaaacacctgctccggct
gaagagggagatatggatgatgaggatgatgaggatgatgaagatgatctcctcatgcgg
ccacagaggcgtatgcatggagatgaagaggaatatgaggatgatgaaggctccaggcgg
ccagcacaggccagtgtactttaccaggatctgttgatgtcagatgcagaagacgatgcc
agtgaggaggaaggcgataatccattctcctctatccaactgtcagagagtggcagtgac
agtgatgctgaactggggcatcaggagagcactcggattggaatagagcaggacgagagt
atgatgtcttatgatggggaggggcatgatggagtaacgcacatggaggacagcaacgtc
agttatggcagctactatgacggagacagtcagatgcaaaggcaggtgtccagccccagg
acaggagaacaggacgtagaggagatgtacgggataagtgaagaggaagaagacgaggag
gaggatgagcggaggcgagggcctagtgttctcacacaggcacagctcagtgatgaggag
gaagacagtgaagaattcagatctgttggaggagacagtgacatggattctgacaactaa
DBGET
integrated database retrieval system
