Rhinichthys klamathensis goyatoka (western speckled dace): 130072752
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Entry
130072752 CDS
T09701
Symbol
skic3
Name
(RefSeq) tetratricopeptide repeat protein 37 isoform X1
KO
K12600
superkiller protein 3
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130072752 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130072752 (skic3)
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
130072752 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_14
TPR_16
TPR_8
TPR_17
TPR_11
TPR_12
TPR_CcmH_CycH
TPR_9
ANAPC3
TPR_6
TPR_MalT
PknG_TPR
ARM_TT21_N
Fis1_TPR_C
ARM_TT21_2nd
TPR_21
HAT_PRP39_N
TPR_Slam
ARM_TT21_C
TPR_15
Coatomer_E
TPR-S
EutA
Motif
Other DBs
NCBI-GeneID:
130072752
NCBI-ProteinID:
XP_056093961
LinkDB
All DBs
Position
Unknown
AA seq
1568 aa
AA seq
DB search
MSSKEVKAELKSAREAIKNKEFKEALKHCKAVLKLEKNNYNAWVFIGVAATELQQPDQAQ
IAYRKATELEPEQLLAWQGLANLYEKGDQADFKAELPKIYQKLITLYETSDKAKCFEVSK
KLVEISQSEKNYLQVARVWRRLIQMKEGEEGVEDSELLELWKEMTRLLQDTIEDQDNETQ
QHLISAFERALEMTVDVPSEAHSSLSQDYIKCLSKLPHEVAKLKEFCDATLSCYPTQSYP
LEALSEHYIITGDCSEEAVRCFQSLSELDPNNSHAHFGLGIKACQDKKYEDALKSIGLGL
KRMRSSSIGWYNLALAQLKMHKYSDSATSSSQGLKSSVGNSDDWTQKLQRLRLDALVRTG
RDQDADEALQILTQISDAKNDPVLLALKGRAHLQKGQTDEAFQVFAELLNSHPGSVEGLT
LKGLTHVAKEQLKQAEESFLEALSRSSDNGELYFLLGRLYWNMGEEIQRDHSKAHTHLLK
AAKLDPYLGSVFRFLGHYYREVAKDQGRARGCYKRAFELDSSDAEAGAATVDLSMEQGDM
DSALTVLQSVTERATPGSAKWAWMRRGLYHLKIGQHQQAIADLQAALRADPQDWVCWECL
GEAYLNRRSFTAALKAFDKAHHLQPTSIYSLYQMAAIKQNLGRFKEAASEYRQILEQEEY
VPALKGLGECLLALAKSALDDYLDGRAVDLIQNAIHYLFSAVKQRPDLSCLWKILGDVCT
TCRTVSTNRAKVLVPGALCGMDPPDQSHTLDQRQLLTVGERCFGHALKLMPEAPSLWCDL
GMNYNHQSRLLSCLFPEEDPQPLLEKALQCVKKAIMLDSANYKYWNALGVVAMAKGIENF
ALAQHSFIKSVKAESNNVVAWTNLGALYLKKGNIELSHEAFKIAQSLEPLYVNCWIGQAF
IAETVGSYDTMDLFRHTTELSTHTEGVKGYAYWVCSTLLDRSNRDSELYLYNIVQMNAVS
AAQVALSKYTERIQTDPDAFIMLGYLNTHLQLKKQATEAYRRAVELLQASPHTDKLSFAL
RGYGRALSDEGHLEEAVRIYSSTPLDELHDLIGLALSCFKISRLPESIQAYEKALAVASS
EKEKACILTALALIQHTLGSMDHAKTLLFKCSMLKEPIPESLQCLCALGLVHGDVTLASA
TLTELLKLGEPVGGAVEEYCLLTCTLLALQGNFSGVHREASRAIHRNPGNPSLWALLSRL
VPQYCPNKASGGAVAGSVACHASLTLGKRALLYSGVNQLASGRHSGEDRRCNALKTIQRA
VLLCPDDPAGWAGLMAACHTENTACLLAGSAPRREDLERAHMTLVSEKVKGLQGEDGLLA
QALEGWVLQQAVTGLKQSGQYDQAETLCSQVLSVSPEHPVVFLMLRQVQCERLLLSEAGN
CVPQAVLDQLSAAVMANLTSVSAWHWLAEVYRSQSLLAQASVAYRRSLQLASQLGDHGGK
TSSLLRLALLALTPCLAGVCVSEWKDLVLEASAEVLKMGNSPVALLFQALLQFSIKMGSR
ETRRLLERIVYGSASGSCETIASVACWYLLRHLHAKDDLELIDTLLLKATAAGDSRLVDF
HRRLYPSS
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtaaagaagtgaaagctgagctgaaaagtgcaagagaagccattaaaaataaa
gagtttaaagaagctttgaaacattgtaaggctgttctcaagcttgagaagaataactat
aatgcctgggtgttcattggagtggcagccacagagctgcagcagccggatcaggcacag
atcgcctacagaaaggccactgaactggagccagagcaactgctggcatggcagggttta
gcaaatttgtacgaaaaaggtgaccaggcagatttcaaagccgagctgccaaagatttac
cagaaacttattacactgtatgaaacttcagacaaagcaaaatgtttcgaagtgagcaag
aagttggtggaaatctctcagtcggagaagaactatttacaggtggccagagtgtggcgg
aggttaatccagatgaaggagggagaggaaggggtggaggattcagagctgctggagctg
tggaaggagatgaccagactcctgcaagacactattgaggatcaggacaatgagactcag
cagcacctgatatcagcatttgaaagagctttggaaatgacagtagatgtgcccagtgaa
gcccacagcagtctctcacaggattacattaaatgtctttctaagcttcctcatgaggtg
gccaagctaaaagagttttgtgatgccacactgtcctgctatccgacacaatcctaccct
ctagaggccctcagtgagcactacatcataacaggtgactgcagtgaggaagctgtccgt
tgtttccaaagtctctcagaactggatcctaacaactcacacgctcactttggtcttggt
attaaagcttgtcaggataagaaatatgaggacgccctcaaaagtattggtctgggactg
aagcgtatgcgttcttccagcattggatggtataatcttgctctggctcaactaaaaatg
cataaatactctgacagtgccacatcttccagccaagggctgaagtcgagtgtggggaat
tctgatgattggactcagaagctgcagaggttgagattagatgctctggtgaggacagga
agagaccaggatgctgatgaagctctgcagatacttacacagatttcagatgccaaaaat
gacccagtgcttttagcgttgaaaggaagagctcacttgcaaaaaggtcaaactgatgaa
gcatttcaggtttttgctgagctgctaaactctcacccaggatctgtggagggtctcact
ctgaaggggctgacgcatgttgctaaagaacagctcaaacaagctgaggagagctttctg
gaggctttatccagaagctcagataatggggagttatatttcttgctgggccgtctgtac
tggaacatgggagaggaaatacaaagggaccatagcaaagcccatacacatttgctcaag
gctgctaaactggacccgtatcttggttcagtgtttcgtttcctgggtcattactacaga
gaggtggcaaaggatcagggcagagccagaggctgctataagagagcatttgagctggat
tcttctgatgcagaggctggagcggctactgtagatctcagcatggagcagggagacatg
gactcagctctgactgttctgcagtctgtgacagagagagccactcctggctctgctaaa
tgggcctggatgaggagaggtctctaccacctcaagattggccagcaccaacaggccatt
gcagatctgcaggcggcgttgagggctgatcctcaggactgggtgtgctgggaatgttta
ggtgaagcttacctgaaccgcaggagtttcacagctgctctgaaagcctttgataaagca
catcatcttcagcccacctcaatctatagcctctatcagatggccgccattaaacagaac
ctgggccggtttaaagaggctgcctcagagtacaggcagatcttagagcaggaggaatat
gtgccggcactgaaaggtctgggtgaatgcttgttagccttggctaaaagtgcactggat
gactatcttgatggaagagctgtagatttgatacagaatgccatccattacctcttcagt
gctgtaaagcaaaggccagacctgtcatgtctgtggaagatactaggtgatgtctgcaca
acctgcagaactgtgtccacaaaccgagccaaagtgctggtacctggagctctatgtggg
atggatccaccagatcagagccatacactggaccagagacagctcctcactgtaggagaa
aggtgctttggtcatgcattgaaactcatgccggaggcccccagtctgtggtgtgacctc
ggcatgaactataaccaccaatccagacttctcagctgcttgtttcctgaggaggatccc
cagcctctgctggagaaagccctgcagtgtgtgaagaaggcgatcatgctggacagtgcg
aattacaaatactggaacgcccttggggtcgtcgccatggcaaaaggaatagagaacttt
gcacttgcacaacacagtttcatcaaatcagtaaaagctgagtcaaataatgtggttgca
tggactaaccttggtgctttgtatctgaagaagggaaacatagagctctctcatgaagct
ttcaagattgctcagtcgctagagcccctttatgtgaactgctggatcggacaggccttc
attgctgagaccgttggcagttatgacaccatggaccttttcagacacaccacagaactg
agcactcatactgagggagtgaagggttacgcgtactgggtttgctccacactgctggac
aggagcaacagagactccgagctctacctctacaacatagttcagatgaacgccgtctct
gctgcccaggtggctctgagcaagtacactgagaggattcagaccgaccctgacgccttc
atcatgctcggatacctgaacacacacctgcagctgaagaaacaggccactgaggcatat
cgcagagctgtcgagttgcttcaggcgtcccctcacacagacaagctcagctttgctttg
aggggttacgggcgtgccctcagtgatgaagggcatttggaagaagcagtgcgtatttat
tcctccacaccattagatgagctgcatgatctcatcgggctggcgctctcctgtttcaaa
atcagtcgcctgccagagagcattcaggcctatgagaaagcccttgcagttgcctctagt
gagaaagaaaaggcctgtatacttactgcactggccctgatacagcacacgctgggcagc
atggatcatgccaaaacacttctcttcaagtgctccatgcttaaagagcccattccagag
agcctgcagtgtctctgtgctctgggtttggttcatggggatgtgaccctggcaagtgct
acgctcaccgagctgctgaaactgggggaacctgtaggaggcgctgtggaggagtactgt
ctgctcacttgcaccctgctggccctgcagggcaactttagcggtgtacatagggaggct
tctagggctatacacaggaacccagggaatccatctctctgggctcttctctccagactg
gtcccacagtactgccccaacaaagccagtggaggagctgtggccggcagtgtggcttgt
catgccagcttgacacttggaaagagggcgttgctgtacagtggagtgaatcagttggcc
tcaggccgccactctggtgaggacagaagatgcaacgctctcaaaacaatccagagagct
gtgctgctgtgcccagatgatcctgctggttgggcggggctaatggccgcctgtcacaca
gagaacactgcatgcttactcgcaggctccgcccctcgcagagaagatctggagagggcg
cacatgactctggtgtctgaaaaagtgaagggcctgcagggagaggacgggctcttggct
caggctctggagggctgggtgctgcagcaggccgtgactggactcaaacagagtggtcaa
tatgaccaggcagagactctttgctcccaggttctgagtgtatctccagagcatcctgtg
gttttcctgatgttgaggcaggttcagtgtgagcgtctcctgctgtctgaggccggaaac
tgtgttcctcaagcggtgctggatcagctcagtgctgctgtcatggccaacctcacttct
gtgtccgcctggcactggttggcagaagtgtaccgctctcagagtctgctggctcaggcc
tctgtggcttatagacggagtcttcagctggcgtctcagctgggtgatcacggtgggaag
acgagcagcctgctccgactagccctgctggcgctcacgccatgtttggctggtgtctgt
gtctctgagtggaaggatctggtgttggaagccagtgctgaagtcttaaaaatgggcaac
tcaccagtagctttgctcttccaagccttactgcagttctccataaaaatgggctccagg
gaaacccgtcgcctgttggagaggattgtttatggttcagcctcaggcagctgtgaaact
atagcgtcggtggcatgttggtacctcctgcgtcatctgcacgccaaagatgacctggag
ctgattgataccctgttgttgaaggctacagcagcaggagacagcagactggtggatttc
cacagacgcctttacccatccagctga
DBGET
integrated database retrieval system
