Rhinichthys klamathensis goyatoka (western speckled dace): 130073149
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Entry
130073149 CDS
T09701
Name
(RefSeq) SR-related and CTD-associated factor 4-like
KO
K13167
SR-related and CTD-associated factor 4
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rkg03021
]
130073149
03041 Spliceosome [BR:
rkg03041
]
130073149
Transcription machinery [BR:
rkg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130073149
Spliceosome [BR:
rkg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
130073149
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
CAF1A_acidic
Hid1
Motif
Other DBs
NCBI-GeneID:
130073149
NCBI-ProteinID:
XP_056094555
LinkDB
All DBs
Position
Unknown
AA seq
695 aa
AA seq
DB search
MDMDAVNAFNGEMSSMMDMTPPISRAKMMSVTKAGIKAIKLYKHVVQIVEKFIKRCKPDL
KVPGLYVVDSIIRQSRHQFGADKDLFGPRFLKNFTVTFQNLFQCPADDKGKILRVLTLWQ
KNEVFGMDVIQPLLDMATAPLLSVLENGTTVAAPPAMPMPIPMAVAEPAPAPFIAAATPA
PAPVPVPNLQSPVPLAAVTQLLQGTGGVELQQLLQSLQQAGGAGLPQSTAPPTEQKPSLA
KSLLDRFDYDDEPEPVEEKTEPAPGAPITINLPPELQQALQAHLLSQIANQVLILADRAL
KNKDLSKILHEIKVFSHVQTQMQGQMVSQGQVPSQGQMAPQELPSMVQTQIPDIPPQTFD
ENLIQHSTTQQPQDSAETERSVHDGRDRRHGRRTGSRSPRRRSSSHSRRSRSGSRSRRER
SRYHRTRSRSRERRGRSPRPRSEEKRDREKERERRQKGFPPIKKETLSVCSTTLWIGQLD
KKTQQQDIMSLMEEFGQIESINMIPPRGCAYIVMVHRQDAHTALSKLSRGAVKVNQKSIK
IAWALNKGIKTDLKKYWDVERGVTYVPWEKVKPDGILNLQEGGMLDLETLKSEWRSAVSK
LVVPVREGPEGKQEDGAALPAVSQVKHEGFPTELLKGVRCLVQLFCSRFVTSSAYSRQTV
FLCYLLCTDGLLVHGCHHIWQMKSHRAPNKARLVS
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggacatggatgcggtgaatgcctttaacggggagatgtcgtccatgatggacatgact
cccccgatctctcgagccaaaatgatgtcagtaaccaaagcaggaatcaaagctatcaaa
ctttacaagcacgttgttcaaatcgtggagaagttcatcaagaggtgtaaaccagatcta
aaggtccctggtctctatgtggtggactcaattatccgacagtcacgccatcagtttggc
gcagacaaagatttgtttggtccgaggtttttgaaaaacttcactgtaacatttcagaat
cttttccagtgcccagccgatgacaaggggaagatattgcgtgtgttaactctgtggcag
aagaatgaggtgtttggcatggacgtcattcagccgctgttagacatggccacagctcct
ctactgtccgttttagagaatggaaccacagttgccgctcctccagccatgccaatgcca
ataccaatggcagtggcagagccagcaccagcaccatttattgcagctgcaacgcctgcg
ccagcgcccgtacccgtacccaaccttcagagcccagtgcccctcgctgccgtcactcag
ctcctacagggcacagggggcgtagagttacagcagcttctccaaagtcttcagcaggct
ggaggggcggggcttcctcagtccacggccccgcccaccgagcagaaaccatcattagct
aagtctctgctggatcgatttgattatgatgatgaacctgaacctgtagaggaaaagact
gaaccagcccctggtgctcccattaccataaacctccctccagaattacagcaagccttg
caagctcatcttctaagtcaaatcgctaaccaggtattaattctggccgacagagcttta
aagaataaggacttgtcaaaaatattgcatgaaattaaagtgttttctcacgtccagaca
cagatgcagggacagatggtgtcgcagggtcaagtgccgtcccagggtcagatggcacct
caggagctcccatcgatggttcagacccagataccagatatccctcctcaaacctttgat
gagaacctcatacagcatagtacaacccagcagccacaggattcagctgagacagaacgc
tcggtgcatgatgggagagatcgaagacacggcagacgaaccggatcaaggtctccacgg
aggcgatcgtcttcacactcacgcagatcgcggtccggttcccgttcccggagagaacgc
tcgaggtatcatcgcacgcgctcccgatccagagagcgtcgaggacgttcaccacggcca
cgctcagaggagaagagagaccgggagaaagagcgagagcggagacagaaaggatttccg
cccatcaagaaggaaactctcagcgtctgcagtactacattatggatcggacagctggac
aaaaagactcaacagcaggacatcatgagtctgatggaggagttcggacagatcgagtcc
atcaatatgattcctcccagaggttgtgcctacatcgtcatggtgcacagacaggatgcc
catacagccctgagcaaactcagcagaggggctgttaaagtcaaccagaaatccattaag
atcgcatgggcattgaataagggcataaagacggacctgaagaagtactgggacgtggag
cggggcgtcacttacgtcccctgggaaaaagtcaaacccgatggtatcctgaatcttcaa
gaaggaggcatgcttgacttggaaacactcaaatcagagtggagaagtgctgtgtccaaa
ctggttgtgccagtaagagaaggacctgaaggaaaacaggaagatggagctgcactacca
gcggtatcacaggtaaaacatgaggggtttcctacagaactcctcaagggtgttaggtgt
ctcgttcaacttttctgctctcgttttgtcacgtcttcggcttatagtaggcaaacagtg
tttctgtgttatttgctttgcactgacggtttactggtgcatggttgccatcatatctgg
caaatgaagagccatagagctccaaataaagcaaggttagtgtcatga
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