KEGG   Rhinichthys klamathensis goyatoka (western speckled dace): 130074006
Entry
130074006         CDS       T09701                                 
Symbol
cop1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
rkg  Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04115  p53 signaling pathway
rkg04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:rkg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    130074006 (cop1)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    130074006 (cop1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rkg04121]
    130074006 (cop1)
Enzymes [BR:rkg01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     130074006 (cop1)
Ubiquitin system [BR:rkg04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    130074006 (cop1)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     130074006 (cop1)
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_EIPR1 WDR55 Beta-prop_RIG_2nd zf-C3HC4_2 EIF3I Beta-prop_TEP1_C Beta-prop_WDR19_1st zf-C3HC4 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd zf-RING_2 Beta-prop_EML zf-RING_UBOX zf-C3HC4_3 Beta-prop_DCAF4 Beta-prop_WDR90_POC16_2nd zf-RING_5 zf-C3HC4_4 RING_XB3-XBAT31 WD40_RFWD3 Beta-prop_WDR35_TULP_N WD40_like Beta-prop_Vps41 Beta-prop_DCAF12 Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 Beta-prop_IFT122_1st zf-RING_10 zf-rbx1 UvrD-helicase WDR90_beta-prop_4th Beta-prop_SPT8 zf_C2H2_10 Sina_RING Prok-RING_4
Other DBs
NCBI-GeneID: 130074006
NCBI-ProteinID: XP_056095451
LinkDB
Position
Unknown
AA seq 672 aa
MSSTRQQQQSGGAAGSVPGTSSGGMSSSSGSGAGGANSGGSGAQNGNSSGNGLSSRTLGS
VAEGQSSRLASSSRKRPLYNGLINPYEDKSNDFVCPICFEMIEEAHMTKCGHSFCYKCIR
QSLEDSNRCPKCNYIIDNVDQLYPNFLVNELILKQKQRSEEKRLKRDHPNGTKWQVFQDV
LGADQENMDLANVNYILEYLLQKKKQLEAESQAAQRQILMEFLKEARRNKREQLEQLQKE
LNFLEEDIKRVEEMSGMYSPVSDMDPNLDSTVPQFEAPSPAPSSSIIDPPEYIQPPFGGS
SQGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSNRMSRITDDSRTVNQLDDFMECLSKFT
RYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVFEYGTVIQDAVDI
HYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVD
FNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCV
HYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTDSQLKLWNVNKPHCLRSFKGHI
NEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDKKEDDTNEFV
SAVCWRALPDGV
NT seq 2019 nt   +upstreamnt  +downstreamnt
atgtcaagcactcggcagcagcagcagtccggcggtgcagcggggtccgtccccggaacg
agctctgggggaatgagcagcagcagtggcagcggagccggtggagcgaacagcgggggc
agcggcgctcagaacggtaacagctcgggtaacgggttgtcctcgcggactctgggctcg
gtagccgagggacagagttctcgactggcctcgtcaagcaggaaaagacccctgtacaac
ggtctgatcaatccctatgaggacaagagtaacgattttgtatgccctatatgttttgag
atgatagaggaagctcacatgacaaagtgtggccacagtttctgttataaatgtatacga
cagagtttggaggacagcaacagatgcccaaaatgcaattatatcattgacaatgtggat
caactttaccccaacttcttggtgaatgaactgatcctgaaacaaaaacagagatctgaa
gagaagcgtctgaaacgagatcatcctaatggaaccaaatggcaggttttccaagacgtt
cttggtgcagatcaagagaatatggatttagccaatgtcaactacatattagagtacctg
ttgcaaaaaaagaaacaactggaggcggaatcacaagctgctcagcgccagatcttaatg
gaattcctgaaagaagccagaagaaataaaagagagcaactggagcagttacaaaaagaa
ctgaactttttggaagaggatatcaaacgagttgaggaaatgagcggtatgtactcacca
gtgagtgacatggaccccaatttagatagtactgtacctcagtttgaagctccctcacct
gcacccagcagtagcataatagaccccccagaatacattcagcccccttttggtggaagc
tcgcagggtaagagacaaacatggtacaacagcactctggcgtcgcggcggaagagactg
acggcacactttgaggatctagagcagtgttatttctccaataggatgtctcgcataacg
gatgacagcaggactgttaaccagctggatgatttcatggagtgtctatcaaaatttacc
cgttacaactctgtgaggcctctggccaccctctcctacgctagtgacctctataatggc
tccagtattgtgtccagcattgagtttgaccgcgactgtgattactttgccattgccggt
gtcactaagaaaattaaagtgtttgaatacggcactgtgatccaggatgctgtggacatt
cattatcctgtcaacgagatgacatgcaactccaaaattagctgtatcagctggagtagc
taccacaaaaatctgttggcgagcagtgactatgaggggactgtcattctttgggatggg
ttcacgggtcagaggtcaaaggtctaccaggagcatgaaaagcggtgttggagtgtcgat
ttcaacctcatggatcccaagctcttagcatcgggatcagatgacgcaaaagtcaagttg
tggtccaccaacctggacaattcagtagccagcattgaagcgaaggccaatgtatgctgt
gtcaagttcagtccatcctctcgatatcaccttgcctttggttgtgcagaccactgtgtg
cactactatgacctgagaaacactaagcagcccatcatggttttcaaaggccacaggaaa
gcagtgtcctacgccaagtttgtcaatggagaagaaattgtgtctgcctcaacggacagc
cagctgaaactctggaatgtgaacaagcctcattgtttgcgctccttcaaaggccacatc
aacgagaagaactttgtgggtctggcatctaatggagactatgtagcatgtggaagtgaa
aacaactcactgtacttgtactacaaggggctctctaagacgctgctgactttcaagttt
gacactgtaaagagtgtgttggacaaggacaagaaggaggacgacaccaatgaatttgtc
agtgcagtgtgctggcgagctctacctgatggggtatga

DBGET integrated database retrieval system