Rhinichthys klamathensis goyatoka (western speckled dace): 130075420
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Entry
130075420 CDS
T09701
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-8-like
KO
K16499
protocadherin delta 2
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rkg04515
]
130075420
Cell adhesion molecules [BR:
rkg04515
]
Cadherins
Protocadherins
130075420
BRITE hierarchy
Motif
Pfam:
Cadherin
Cadherin_2
RET_CLD1
Motif
Other DBs
NCBI-GeneID:
130075420
NCBI-ProteinID:
XP_056096002
LinkDB
All DBs
Position
Unknown
AA seq
1256 aa
AA seq
DB search
MNFIRKLCATFMVPTALQEDKQFLLFKEKANHLPGRKLNIGFTTRVKLNKLLDDGDITPE
QMKQFHEATLAFLTNAVDFALKKLPLQEPLLKHAKFVDFRQRLECGVEDALYFVESPGYS
AKYTTFSLMDDITDKVVHFELVQVTESSSSVAMESTGFRRALNKILDDNIGLSVVTTDRS
PSIRKIMRVDYQNIHHEFDIWHVALVIIFVLPFLSTLTVGMIMKYQTYEEGALFTVIGNL
AKDMSLNPSDDAKTNFKMMKQFNASFIRLREKDGQLTVGERIDREKICKNVIQCLIAFDV
VSLSNEQFKLIHIEVEVKDINDHAPEFSRKESTLEISENTPVGTRISLDVAMDEDVGLNY
IQSYQISVNSHFTIEVLSRADGVKYAELVLMKELDRETHAFYVLELIATDGGNPSRSSTT
KINVKVKDFNDNSPVFDRNNFSVDILEDSPVGFLLLDLNAVDPDDGLNGEVVYGFGNQVP
LEIRQHFSVDRKSGKLTLESPIDFESKKTYEFDIQASDLGPNPSPSICKVVVNVQDVNDN
APEITITPLHYITIGSVTAEIAYITEDVAKESFVALISTADRDSGANGQIHCALYGHSNF
KLQQAYEDSFMIVTTSPLDREKIAEYNLTVVAEDLGSPSLRTIKQYTIRLSDENDNAPVF
SKPVYEVSLVENNAPGAYITTVLARDPDLGENSKISYKLLDTYIIGSPVSTFVSLDSETG
SLYALKSFNYEVLKQLQLRIQGSDGGSPPLQGRAIINLKIVDQNDNAPSITLPALSNSSA
EVMLPKNAPSGYVITQIHARDADEGVNAELSFRISEGVSSVFSINRATGEIYLNRELNYK
VYESLRITVSVSDNGRPSLTTVVIIDFKIIAGSPPSDRNIFRHRTDEEIREGDYSLVIIV
VLAGSCTLLLLAIILIATSCNKRKVNNQGDRHSGNEDRVKADHNDPLIPIHSGIMFDIQP
YSKKKKTFSGFIQTGSDISCSSEDGTCVCDVKDKSRGVKSEDYSTLPGYGKDALRLTKIW
KGTSTIAARDPQFSGKDSGNGDSDFNDSDSDPSGDGPRKDDHQNNVQNGLWACTSKCKIL
GHSDDCWCPTAAMTNSTLAHSFAKTGSLQRDTLGRENYQAHIPKTEGLQNVCEKVMDREY
DYITIVHSPQQGRLHXMNNITIPIMCSTLYVTDRGWGETTTRTNYHSEELHQEHHEAGHK
TAVDLRSSGKGTFRITVELKTGYKCLQKSNSIQREDRRFLLLPDGSGTRELRQGDL
NT seq
3771 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcattcgcaagctgtgcgccacgttcatggtgcctacagcgctgcaggaagac
aaacaattcttgctttttaaagaaaaggcaaaccatttgccaggaagaaagctgaatatt
ggattcaccaccagggtgaagctcaacaagctactggatgatggagacatcacgccagag
cagatgaagcaattccatgaagctaccttggcatttctgaccaatgctgtggactttgct
ctaaaaaagctgcccctacaagagccactgctcaagcacgcaaagtttgttgattttcgg
cagaggttggaatgcggtgtagaagatgccctttactttgttgagagtcctggatattca
gcaaagtacaccacattcagcttgatggatgacatcacagacaaagttgtacactttgaa
ctggtgcaagttacagaatcatcaagctctgtagcaatggagtcaactggtttccggaga
gcactcaacaaaatcctagatgacaacattggattaagtgtggtgacaaccgacagatcc
ccatcaattcgcaagataatgcgagtagactaccaaaacattcatcacgagtttgacata
tggcatgtggcattagtgatcatctttgtactgccttttctgtctactttaacagtggga
atgatcatgaaatatcagacttatgaagagggcgctttattcaccgtcatcggaaacttg
gccaaggacatgagcttaaatccctcagatgacgctaagaccaatttcaaaatgatgaag
cagttcaacgcatcttttattaggctcagagaaaaagacggacagctaacagttggagaa
cgaatagacagagaaaaaatatgtaagaatgtgatccagtgtcttattgcattcgacgtt
gtgagtctctcgaatgagcaatttaaattgattcatattgaagtggaagtaaaggacatc
aacgatcacgctcctgagttctctagaaaggaatcaactttggaaatttcagaaaacaca
ccagtcggcactagaatatctttagatgttgctatggatgaggacgttggtttgaactac
attcaaagctaccaaatatctgtcaacagtcactttactattgaagtgttgagcagagct
gatggggttaaatatgcagagttggtgctaatgaaagaactcgacagggagacacacgcc
ttctatgttttggagctcatcgcaacagacggaggaaatccatcaaggtccagcaccaca
aagatcaacgtcaaagtaaaagacttcaatgacaatagccctgtgttcgaccggaacaat
ttttcagttgatatactggaggactcgcctgtggggtttctgcttttggacttaaatgcg
gttgatccagacgatggattgaatggggaagttgtatatgggttcggaaatcaggtgccc
ttggagatccgacaacatttcagcgttgaccgaaaatccgggaagttgacgctcgagagt
ccgattgattttgagagcaagaaaacatatgagttcgatatacaggcatctgacttgggt
cctaatccgagcccatccatctgtaaagttgttgttaacgtgcaggatgtgaatgacaat
gcaccagaaatcacaattacaccactacattacatcactattggctcagtcacagcggaa
atagcgtacatcaccgaggatgtagctaaagaaagctttgtggctctgatcagcacggcg
gacagggactcgggcgcaaacggacagattcactgtgctctctatgggcacagtaacttc
aaactccagcaagcttatgaggacagttttatgattgtaacgacatctccacttgacaga
gaaaaaattgcggagtataacttaacggttgttgccgaagacctgggatcaccttcctta
agaacaattaagcaatatactataaggttgagtgatgagaatgacaacgcgcctgttttc
agtaaacctgtctatgaagtgtccttggtggagaacaatgcaccaggtgcatatatcaca
actgtattggccagagaccccgacttaggggaaaacagcaaaatcagctataagctcctg
gacacctacatcataggctctccggtgtcaacttttgtctctctggattctgaaacgggc
tcgctctatgcgctcaaaagtttcaactacgaggtcctcaaacagctacagctacgtatt
caaggaagtgacggaggctcgccaccactccaaggcagagcaatcatcaatctaaaaatt
gttgaccagaatgataacgctccctctatcacgctgcctgcgctgagtaatagttctgcc
gaggttatgctacccaaaaacgcaccttcaggttacgttataacccagatacatgctagg
gatgcggacgaaggcgtcaacgcagaattgtcattcagaatctcagagggcgtctcctct
gtgttctccattaatagagccaccggagaaatttatctgaatcgtgaactcaactacaaa
gtttacgagagcttgagaataacagtaagtgtcagtgacaatggaagaccttcactaact
acagtagtcattatcgatttcaagatcattgcaggatctcctcccagtgaccgcaatata
ttcaggcacagaactgacgaagagattcgggaaggggattattcactcgttataattgtg
gtactggcggggagctgcacactactacttttagccattattctcattgcaacttcttgt
aataaacgaaaggtgaataatcaaggagacagacattctggaaatgaggacagagttaaa
gcggaccacaacgacccactaattccaattcacagtggcatcatgtttgatattcaacct
tactcaaaaaaaaaaaaaactttttctggcttcatccagacaggcagtgatatttcctgc
agttctgaagatggtacgtgtgtctgtgatgtaaaggacaaaagccgcggagtcaagtca
gaagattattccactctacctggttatggtaaagatgctctgagacttacaaaaatttgg
aaaggcacatcaaccatagcagcacgagaccctcaattcagtggaaaggacagcgggaat
ggagacagcgacttcaatgacagtgattcagatccaagcggcgatggaccaagaaaagac
gatcatcaaaacaacgttcaaaatggtctgtgggcatgcacaagcaagtgcaagatcttg
ggccattcagacgactgctggtgtcccactgctgccatgacaaacagcactttagcacat
tcgtttgctaagacaggttcacttcaacgagacacccttgggagggaaaactaccaagcc
cacattccaaaaacagagggattgcagaatgtctgtgagaaagtaatggacagagaatat
gactatataactatagttcattcacctcaacaaggcaggctacattaaatgaacaatatt
acaatcccaattatgtgcagcacattgtatgtcacagaccgggggtggggagaaaccacg
acccgtaccaactaccactctgaggagctacaccaggaacaccacgaggctggacacaag
acggcagtggatctcaggagctcaggcaaggggaccttcaggatcacggtggagctcaag
acgggctacaagtgtctccagaagagcaactccatacaacgtgaggaccggcgtttccta
ctccttccagacggcagtggaactcgggagctcaggcaaggggacctttag
DBGET
integrated database retrieval system
