Rhinichthys klamathensis goyatoka (western speckled dace): 130075621
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Entry
130075621 CDS
T09701
Symbol
frem1a
Name
(RefSeq) FRAS1-related extracellular matrix protein 1a isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130075621 (frem1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
rkg04091
]
130075621 (frem1a)
Lectins [BR:
rkg04091
]
C-Type lectins
Lecticans
130075621 (frem1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Calx-beta
MBD
Motif
Other DBs
NCBI-GeneID:
130075621
NCBI-ProteinID:
XP_056096314
LinkDB
All DBs
Position
Unknown
AA seq
2162 aa
AA seq
DB search
MTAIDRAYLPFLMLGLLHQIQGSLVKNNLGLKVKRGQSVFLQEGDLQFYIPRDKDACKLE
VVLNEPITQRVGTLSPQVFDCHFLADEVKYTHNGCPILKEDTVKLRLYRFTETETYSELF
SLSVEIMDPDCNVIRFGSQSLEVPEFYGLSNILDGNVVSFHYEHRHNIECTVQMTTLETH
LPVHGQLVTGEPDKPEGPRGDEPDSFVPLRRQLDNKARAHCKSDDCLKGLKLLKIIKVPC
NDFLMMGIRYHHIDPPSPDIDYIAIRLDLIDTRSRSIIQSEQAWIPVTIKDAMPNQPPKP
AFMSMFILEVDQFILTPLSTATLDAEDDETPKQRLVFNITNPPNEGFITHLSDHTKPISS
FSWMDLNDMLISYQPPNSSHTQRRNYEVEFEVHDFYFEKSQPVMVHVSIRTAETNAPRVS
WNMGLSLLEGQSRPITWDQLQIVDNDNLKAVRIITVDGLQHGRLTVRGGKGFMFTVKDIK
DGAVHYHHDDSDTTKDFIVFRITDGLHQTRHKFPINVLPKDDSPPFLITNMVLELSEGQT
GLLRGSILQACDMDSSDDYIMFNITRPPQAGEIMKMPGPEITGYPVTRFLQKDLFHSIIY
YRHSGSEVFDDSFEVVLSDFHDPPNLSEPQVIVIQIQPVPDQPPQEAPGVTRHLVVNETD
VTYLTKQQLHFVDLESPDSELTYTVTTPPFYSTTYGGSDAGRLFLVDSIPKFKKDPNAPM
LRLFTQNAVNYMKVAYMPPILDIGPYPQHIQFILSVTNQQDSMTAGICFNITILPVDNLA
PEVHVRQLTVDEGGESWVSEEHMRLKDQDSLEDSLHVELKTKPQHGSIYLDGTAMSPGQT
FTVRDLKSLKVRYRHDSSETEHDDIKFIATDGINIADFVLHVKVTPVNDEAPMLVPGLKP
ILACAEGQEVVITIEYICATDPDSDDSTLMYMIARQPYHGVVQRNDIVVDRFIQADITAG
LISYRHTGHEIGLQPRHDIVTFVISDGESGLLPSCCSDKATIFSAQTPEIQSSLPVYDLN
ITVYPVNNQPPSIAVGEVFVVNEGGSASITVTHLRVEDQDSAPEDLKLILVAPPQFGYIE
NILPSPGFEKSNMGISIASFTYRDVLNGHINYVQSRHQRMEPTTDQIMLHVSDGKQQSSS
VLFYIIISPTNDEIPDFLARNITVREGDMKELDPSIISAVDLDVPRDRLMFSIVQQPQHG
SIMSVPHGNDVTHYKRGSEIPVEHFTMDDLRSGMTLMYMHDDSESEQDGFIVQLSDGKHQ
LQKHMQVKVLPVNDEEPQIIRNTGLEMEAGESRLISSAVLSAHDKDTSSSDIVYVFESIP
SHGVIQMKVGTDWVSVSAGMNCSQQVLDMNLLRYLHTSNPGAPADDFFVFHLLDGKNRSP
AQHFHITVKELEKGDIALFLKPVRSSRGERVVLTTDVLLAVDGTDKPEELLYVITVPPAH
GHVEYIKHTGMQIQSFSQLDVAANLVCYVHDNRATSPKETLQFVVSNGISTRNGTLEILV
EMTDKVLPTLVHNTGLRVPQGSTITLTPDALFLSDPDSPHTALSYRVVHPPQYGQLLLKG
QTLVAASSFTQQNIQDLAVSYRHSGGASQIDRFRFTASDSTERGFLLDGHVQTEPLFFTL
QIEALDSSAPQIAVLETLWKVELLKDGRYGIFISSRELKAQDKNSADGDLIYHILRPPYF
GYLENYTNGEFVRHRFSQRDLNRRNILYIINSALDSLTDSLEFAVSDALGKSGLSHKLEF
SWASVELTRTEYIICESQGSVSLTIQRKGNVQDSSYVTVQVKELTASAGKDFIPASSLIQ
FDPGMVSRGWRVEMVQDSLEEGDEKFEVTLISPVGAMLKDKSKATIFIKDTNGQCRETRI
KAGTSIQGREVEPGPYPQHGSIQVETLPFSQGYIRGDGDITAEAPSTTKKTLRVIGNGKV
VQPSEIIRDGSDVIYKYHGMVSMAVEDNADSRTDRKAQVQVTSWGQHHAPALRTKLQQTD
RVLQPSGTRPSSKPCTPELSGFLHYNDSSGQMFHCNGVSWRPWTPTNETVKAQKCPRGWT
YHNDFCYILSTERKATWSTAVRACRESFNGNLVSVLSKGDMDWLWDFSERKPFWIGLNDR
ESKGRWEWVGGEPVTYTNWRRSPPKNRKKGTRKCVLVWRKTKWQIRDCKKGKGHRYVCYV
KM
NT seq
6489 nt
NT seq
+upstream
nt +downstream
nt
atgactgcaatagacagggcatatttgccttttctaatgctgggacttctccaccagatt
cagggctctctggtaaaaaacaatcttggtcttaaggtaaagagggggcagtcagtcttt
ctgcaggagggggacttgcagttttatatacccagagacaaggatgcctgcaagctggaa
gttgtgctgaacgagcccattacacagcgggtcggcacactgtccccacaggtttttgac
tgtcactttttggctgatgaagtgaaatacactcataatggatgtccgattttaaaagag
gatactgttaaacttcgtctgtacagatttacagagacagagacatacagtgagctgttc
tctctcagtgttgaaatcatggaccctgactgtaatgtgattaggtttggatcacagagt
cttgaggtgccagagttttatggcctctccaatatcctagacggtaatgttgtgtccttc
cactatgaacaccgacacaatattgagtgcacagttcagatgacaactttggagacacat
ctacctgttcacggtcaactagtcaccggggaaccggacaaaccagagggaccgagagga
gatgaaccagatagctttgttcctcttcgaagacagctggataataaagctcgagctcat
tgtaaaagtgacgactgtctaaagggtcttaaactgctgaagatcatcaaagtaccatgc
aatgatttcctcatgatgggtatccgctaccaccacatcgatcctccatctccagacata
gattacatcgcaattagactggatctcatagacactcgtagcagaagcataattcagtca
gagcaggcctggatcccggtaaccattaaagacgcgatgcccaaccagccgcccaagcct
gcttttatgtccatgttcatcttagaggtggaccagttcattctgactcctctctccacg
gcaactctggatgcggaggatgatgagacgcccaaacagaggctggtgttcaacattact
aacccccctaatgagggcttcattactcatctgtctgatcacaccaaacccatctcctcc
ttctcctggatggatctcaacgacatgctgatcagctaccagcctccaaactccagtcac
acgcagcggcggaactatgaggtggagtttgaggtgcatgatttctactttgagaaaagc
cagcctgtgatggtgcatgtgtcaatcaggacagctgaaaccaatgcaccaagagtatca
tggaacatgggtctcagtctgttggaaggtcaatcccgtccaatcacatgggatcagctg
cagattgttgacaatgacaacctgaaggctgtgaggatcatcactgtggatggcctgcag
cacggcagactaactgttagaggtggaaaaggtttcatgttcactgtgaaggatattaag
gatggtgcggtacactaccatcatgatgacagtgacactactaaagattttatagttttc
cggattactgatggtttacatcaaactagacacaagtttcccatcaacgtcctgcccaaa
gatgacagtccacccttcctcattaccaatatggtgctggagctgtctgaaggtcagacg
ggtcttttgagaggatccattttgcaagcctgtgatatggactcaagtgatgactacatc
atgttcaacatcaccagacctcctcaggcaggggaaatcatgaagatgcctggtcctgag
ataacaggataccctgttacccgttttcttcagaaggacctcttccattccatcatctac
tatcggcactcaggcagtgaggtgtttgatgactcttttgaggtggtgctctctgatttt
catgaccctcctaatctttcagagcctcaggtcattgtgattcaaatccagccagtccct
gatcagcctccacaagaggcaccgggtgtgaccaggcacttggttgtcaatgagactgat
gtcacctacttgaccaagcagcagctgcactttgttgacttggagtcaccagatagtgag
ctcacatacaccgtaaccaccccacctttctacagcaccacctatggagggtctgatgca
ggaaggttgtttctggttgatagcatcccaaaatttaaaaaggacccaaatgccccgatg
ctgagacttttcactcagaatgcagtcaactacatgaaagtagcttacatgcctcccatc
ctggacattggaccctacccccagcacatccagtttatcctgtcggtgaccaaccagcaa
gacagcatgaccgctggaatctgcttcaacataacgattctgccagtggataacctggca
ccagaggtacatgtgagacagctgacggtggatgaggggggagagagctgggtgagtgaa
gaacacatgcgtctaaaggaccaggactcgctcgaggattctctgcacgtggagctgaag
actaaacctcagcatggcagtatttacctggatggcacagctatgagtccaggccagact
ttcacagtcagggatctgaaaagcctaaaagttagatatcgccatgacagctctgagaca
gaacatgatgatattaaattcattgccacggatgggataaatattgctgactttgtacta
catgtcaaggtgacgccagtcaatgatgaggcgccaatgctagtgccaggtttgaaaccc
attttagcctgtgcagagggacaggaagtggtcatcaccattgagtacatctgtgccaca
gatcctgacagtgatgatagcacattgatgtatatgatcgcccgacaaccatatcatggg
gtagttcaaagaaatgacatcgtggtggaccgcttcattcaagcagatataactgctggc
ttaatttcctatagacacacaggacacgagattgggctacaaccacgtcatgacattgtc
acgtttgtgatctctgatggagaatcagggctacttccttcctgttgcagtgacaaagcc
actatattcagtgcacaaacacctgaaatacagagttccctgcctgtctatgaccttaat
atcaccgtttatcctgtgaacaaccaaccaccatctattgctgttggagaggtgtttgtg
gtgaatgaaggagggtcagcctctatcacggtgacccatctgagagttgaagaccaagac
tctgctccagaagaccttaagctcatcctggttgctcctccacagtttggctacatagag
aacatcctgcccagtccaggatttgaaaagagcaacatgggaatcagtatcgcttctttc
acctacagggatgtgttgaatggacacattaactatgttcagtctagacaccagaggatg
gagccgaccactgaccagatcatgctgcatgtgtccgatgggaaacagcaatcctcttca
gtcctgttctacatcatcatcagtccgaccaatgatgagattccagacttcctggccaga
aacatcacggttcgggagggagacatgaaagagttggacccatctataatcagtgcggtg
gatcttgatgttcccagagaccgtttaatgttcagcatagtccagcagcctcagcacggc
tccatcatgagtgtcccacacggcaatgatgtgacgcattacaagcgcggatctgagatc
cctgtggagcacttcactatggatgacctcaggagtggcatgactctgatgtacatgcac
gatgactctgagagtgagcaggacggatttattgttcagctctctgacggaaaacaccag
ctccagaaacacatgcaggttaaagtactgcctgtcaatgatgaggagccacaaattata
cggaacactggccttgagatggaggctggggagtccagactgatctccagtgctgtgctt
agtgctcacgacaaagacacttcttcttctgacatcgtctatgtttttgagagcataccg
agtcatggtgtcattcagatgaaggtcggcacagactgggtgtctgtatctgcaggaatg
aactgctctcagcaggttttggatatgaacctgttacggtaccttcacaccagtaatcct
ggagcacccgctgacgacttctttgtctttcacctgttggacggcaagaaccgctctcct
gctcagcacttccacattacagtcaaagaactggagaaaggagacatagcattgttcctg
aagcctgtgaggtctagtcgaggggagcgtgtggttctcaccacagacgtcttgctggcg
gtggacggcactgacaagccggaggagctgctctatgtcatcactgtacctccagcacat
ggtcatgtggagtacatcaaacacaccggcatgcaaattcagtcgttcagtcagctggac
gtagcagcaaacctggtgtgttatgtacatgacaacagagccacttcacctaaagagacc
ctgcagtttgtggtcagcaatggcatatcaactcgcaacgggaccctggagatcttagtg
gaaatgactgataaggttctccccacactagtgcataacactggtctacgggttccccag
gggtccaccataactttgacacctgatgccttattcctgtctgatcctgacagcccacac
actgccttgagctacagggtggtacaccctccccagtatggccagttgcttttgaaggga
cagacactggtcgctgctagcagttttacccagcagaacattcaggatctggctgtttca
tacagacactctggaggagcttctcagatcgatcgcttcagattcacagcctctgacagc
acagaaagaggcttcctgctggacggacacgtgcaaactgagccgctcttcttcactctg
caaattgaagctctcgacagctcagctccacagatagcagtgttggaaaccctgtggaaa
gtggagctcctcaaagatggtcgttatgggatctttatatcctccagagagcttaaggct
caggataagaactctgcagatggtgatctgatctatcacatcctcagaccgccttacttt
ggatacctggaaaattataccaatggtgagtttgtgaggcatcgtttctctcagagggat
ctgaacagaaggaatatcctctacatcataaactctgctctagactctttaactgacagc
ctggagtttgccgtgtctgatgcactgggcaaatctggactttctcacaaattggagttt
agctgggccagtgtggagctgaccaggactgagtatatcatatgtgagagtcaggggtca
gtctcactaaccatccagaggaaggggaatgtgcaggactcgtcttatgtgactgtacag
gtgaaagaactaacagcatctgctggaaaggattttataccggcttcatctttgattcag
tttgacccagggatggtcagtcgaggatggagagtggagatggttcaggattctttagag
gaaggtgatgagaaatttgaggttaccttgatatctccggtgggtgcaatgctgaaagac
aaatcaaaagccaccatcttcataaaggacacaaatgggcagtgcagagagacccgaatc
aaagcaggaactagtattcaaggccgggaggttgagccaggtccgtaccctcaacacggc
tccatccaggtggagacattacctttctctcagggctatatcagaggtgatggagatata
acagctgaagctccctccactacaaagaaaacactcagagtcattgggaatggaaaagtg
gttcagccttcggaaattattcgtgatggatctgatgtcatttacaaatatcacggtatg
gtatcgatggcggtggaggacaacgctgactccaggactgacagaaaggcacaggtgcag
gtgaccagctgggggcagcatcacgctcctgcgctcaggacaaaactacagcaaacggac
agagttctgcagccttctgggactcggccttcttctaaaccctgtactccagagctcagt
ggcttcctccactacaacgacagctcaggtcagatgtttcactgtaatggagtctcctgg
aggccctggacacctactaatgagactgtgaaagcacagaaatgtcctcgaggatggacg
taccacaacgacttctgttatattctgagcacagagcgcaaagccacgtggagcactgcg
gtgcgggcctgcagagaaagcttcaatggaaacctggtcagtgttttgtcaaaaggagac
atggactggctgtgggacttcagtgaaagaaaacccttttggattggtctgaatgatcgt
gaaagtaaaggccgctgggagtgggtgggtggagagccggtcacttacaccaactggagg
cggagccctccaaaaaacaggaagaagggaaccaggaagtgtgtcctggtctggaggaag
acgaaatggcagatacgagactgcaagaaaggaaagggacaccgttatgtgtgttatgtt
aaaatgtaa
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integrated database retrieval system
