Rhinichthys klamathensis goyatoka (western speckled dace): 130076056
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Entry
130076056 CDS
T09701
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130076056 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130076056 (ndc1)
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
130076056 (ndc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ndc1_Nup
Curto_V3
Motif
Other DBs
NCBI-GeneID:
130076056
NCBI-ProteinID:
XP_056096931
LinkDB
All DBs
Position
Unknown
AA seq
671 aa
AA seq
DB search
MFSLKQNCWFIKKVVIWRAMASIAWSVLLLPVTTAVFVLLSRFSLFHPIQWISECISLLT
ASTTIFSLVVLCGVVLMIGFFNLEFYTLVPSIRCSRMALLGTVLHPRQCVHSLVYCTMGM
LVMWCASVTIGGRYSTLGTPCRQSESGEFVTCLNEYHLFLLLAGAFMGYSHSFLGVVQNM
YYVSFQPIQQYKYPRFKSCLPAVVKCSVIQSLYSARNFAALYFFFGYVPKTWIASTLNLQ
IDSSLQPLDSLTGLLDFSLLYHLAISGTFLYLTWYLTVLLFRIYVIEAYSFPVQSTFTED
AEQCLPKVLAEKNTSVMKFLALQDLALLSQHSLSRRLEVFSLSQPGGHPHNWNAISKECL
SLLSELTQRLVAHQDAVASNGRVKSQSASSDTRSASSSSSVMSGTEDIPETLRLGVPLRT
PGSVFKSSMGGAHSALTAPFTPDVDSPFSSPAIRRLVGQQEPQSPWFGTVQSPHVMRRGP
KLWSASTESQTNGSPLASPATVPSPPAANQKPSFLTQWMQNRREQVKSFLAKRVLIVYLF
NKLPEASSQALFADSQAHIWALQGLSHLVAASFSEDQFGVVQTTLPSILSCLVVLLEAVD
RHFKLPHASSKPARTICSMGDSTYKTLRFALRASLKTAIYKITTTFGEHLNAVNISSEHR
KRLQQFLEFKE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgttttcgctcaaacagaactgttggtttataaaaaaggttgtaatatggagggcgatg
gcgagtattgcatggtcagtgcttctcttgccagtgacaactgcagtctttgtgctcttg
agtagattcagcctgtttcaccccatccaatggatttcagaatgcataagtcttcttacg
gcctcaaccaccatcttttcccttgtcgtgctgtgtggagtggttctgatgattggcttt
ttcaacctggagttctacactttggttccttccattcggtgttcacgtatggctcttctg
gggacagtgctccacccgcgacagtgtgtccattctttggtctattgcaccatgggcatg
ctggtaatgtggtgtgcttctgttaccatcggtggacgttacagcactctaggaactccc
tgcaggcaaagtgagagtggtgaatttgtgacctgtctgaatgagtatcatctctttctt
ctcctggctggggccttcatgggatacagtcatagttttttgggagtggttcaaaatatg
tactatgtgtcctttcaacccatacaacaatacaaatatccacggttcaagagctgtcta
ccagcggtggtgaagtgcagtgttattcaatccttatattcagccaggaattttgctgct
ctctatttcttttttggttatgttcctaagacctggattgccagcacacttaatctacag
atagacagttctctccaaccactagattcattgactggacttctagacttctccctactc
taccacctggcgatcagtggcactttcctgtacctaacctggtacctcactgtgctactc
ttcaggatttatgtcatagaggcctacagttttccagtgcagtccacatttactgaggat
gcagagcagtgtctgcccaaagttttggctgagaagaacacttcagtcatgaagtttttg
gctctgcaagacctggctttgttatcgcaacactctctctcacgtagactggaagtcttc
agtctgagtcagccaggtggtcaccctcacaactggaatgccatcagtaaggaatgtctg
tctttgctgagtgagctgacacaaagactggtggctcatcaggatgcggttgcctctaat
ggccgagtcaaatctcaatctgccagcagtgacaccagatcagcctcttcaagcagctca
gtgatgtcaggaacagaggacattcccgagactcttcgactcggtgtcccgctaaggacc
cctggttcagtcttcaagtcatcgatggggggtgctcacagcgctctgacggctcctttc
accccagacgtggacagccctttctcttctcctgctatccgacgtctggttggccaacag
gaaccccagtctccctggtttggtactgtacaaagcccccacgtcatgaggaggggcccc
aaactttggagtgcctccacagagtcacaaaccaatggcagtcctctggcctccccagcc
accgttcctagtcctcctgcagccaatcagaaacccagcttcctgacccagtggatgcaa
aacaggagagaacaggttaaaagctttttggcaaagcgggtgctgatagtgtatttattt
aacaagcttccagaagcctctagccaagctctgtttgctgacagccaggctcatatttgg
gctctccaaggactctctcatctggtggcagcctctttctctgaggatcagtttggagtg
gtgcagactacattacctagtattcttagctgcttagtagtcttgttagaggctgttgac
agacacttcaaactgcctcatgcttccagcaaacctgcaaggacaatctgcagtatgggt
gattccacttacaaaactctaaggtttgcactgagggcttcgctaaagacggccatctac
aagataactaccacttttggagagcacttgaatgctgtgaatatttcatcagaacataga
aaaaggcttcaacagttcttggaattcaaggaatag
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